Hg_chrom7_TN10mRNA_13413
Organism: Heterodera glycines Gene Locus: chr7:1528524-1530286 Feature type: polypeptideProtein Sequence
Length: 367
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 1.077 | 0.941 | 1.221 | 0.681 | 1.048 | 0.519 | 1.635 | 2.119 | 1.068 | 1.032 | 1.603 | 1.817 | 0.786 | 1.335 | 0.856 | 0.625 | 0.661 | 2.096 | 0.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12650
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKMEIVNFRGNAYSRKGRL
|
— | — |
91-111
|
0.890
|
— | — |
0.000
|
— | — |
0.523
|
0.244
|
0.022
|
0.545
|
0.124
|
0.060
|
0.086
|
0.033
|
0.248
|
0.219
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000012
|
42.000
|
12.000
|
Hsc_gene_11942.t1;Hsc_gene_23371.t1;Hsc_gene_23375.t1;Hsc_gene_23408.t1;Hsc_gene_23420.t1;Hsc_gene_23468.t1;Hsc_gene_23924.t1;Hsc_gene_24786.t1;Hsc_gene_24792.t1;Hsc_gene_24801.t1;Hsc_gene_5341.t1;Hsc_gene_5395.t1
|
— | — | — |
KAI3411121.1 hypothetical protein GPALN_003204 [Globodera pallida]
|
MDQ2994575
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-367
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
42197.220
|
9.498
|
21.000
|
25.886
|
13.896
|
44.414
|
55.586
|
16.621
|
9.264
|
44.414
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
red
|
8.446
|
1.837
|
7.858
|
9.476
|
9.448
|
9.168
|
6.699
|
11.834
|
0.000
|
15.831
|
9.046
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.862
|
2.231
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.