Hg_chrom7_TN10mRNA_13418
Organism: Heterodera glycines Gene Locus: chr7:1546131-1547446 Feature type: polypeptideProtein Sequence
Length: 237
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.883 | 1.178 | 1.381 | 1.164 | 1.688 | 0.649 | 0.603 | 1.266 | 0.844 | 1.311 | 0.575 | 1.489 | 1.641 | 0.811 | 1.378 | 1.145 | 0.692 | 0.511 | 0.974 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12654
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.281
|
0.660
|
0.029
|
0.494
|
0.210
|
0.068
|
0.102
|
0.052
|
0.080
|
0.129
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010978
|
1.000
|
1.000
|
Hsc_gene_24015.t1
|
Hsc_gene_24015.t1
|
— |
O88425.1 Nucleoside diphosphate kinase 6 [Mus musculus]
|
KAI3413697.1 N-acetyltransferase 10 [Globodera pallida]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.881|GO:0110165_0.875|GO:0005622_0.832|GO:0008150_0.805|GO:0016020_0.795|GO:0005737_0.764|GO:0003674_0.705|GO:0043226_0.687|GO:0043229_0.666|GO:0009987_0.654|GO:0043227_0.651|GO:0043231_0.629|GO:0003824_0.576
|
IPR023005+172-180+|IPR034907+5-78_5-198+|IPR036850+2-200_4-195+
|
SM00562+5-198+
|
PF00334+5-78+Nucleoside_diphosphate_kinase
|
— |
PTHR46161+5-78+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
210-237
|
1.000
|
1-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
27027.170
|
4.473
|
-14.000
|
30.802
|
12.236
|
50.633
|
49.367
|
13.080
|
17.722
|
48.523
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
570.795
|
901.539
|
416.236
|
462.444
|
506.400
|
396.858
|
747.239
|
521.710
|
383.114
|
727.734
|
580.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.345
|
-1.100
|
0.261
|
— |
-0.337
|
0.924
|
0.289
|
0.663
|
— | — | — | — | — |
No JSON data available for plots.