Hg_chrom7_TN10mRNA_13423
Organism: Heterodera glycines Gene Locus: chr7:1590690-1598410 Feature type: polypeptideProtein Sequence
Length: 588
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 0.633 | 0.495 | 1.29 | 0.595 | 1.701 | 0.769 | 0.68 | 0.718 | 1.011 | 0.335 | 1.801 | 1.417 | 2.126 | 1.874 | 1.045 | 1.282 | 0.902 | 0.654 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12659
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRKTFCCGGRRSGRRRCA
|
3-23
|
0.975
|
87-107
|
0.998
|
— | — |
0.003
|
— | — |
0.193
|
0.140
|
0.174
|
0.197
|
0.178
|
0.098
|
0.266
|
0.065
|
0.450
|
0.668
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004514
|
1.000
|
2.000
|
Hsc_gene_24030.t1;Hsc_gene_7130.t1
|
Hsc_gene_24030.t1;Hsc_gene_7130.t1
|
— |
P34572.4 Uncharacterized protein T16H12.9 [Caenorhabditis elegans]
|
KAI6191249.1 putative G-protein coupled receptor C02B8.5 [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR029034+471-572+
|
— | — | — |
PTHR33995+209-585+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
96-139;345-468
|
3.000
|
1-95;140-344;469-588
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
65035.940
|
10.072
|
34.000
|
19.048
|
9.184
|
43.537
|
56.463
|
12.755
|
6.293
|
55.442
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
1972.790
|
188.697
|
479.713
|
1486.806
|
1214.840
|
2346.566
|
444.629
|
765.169
|
13.238
|
6023.620
|
3447.742
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.118
|
2.841
|
1.740
|
-0.324
|
0.966
|
-2.392
|
-1.723
|
-0.641
|
-6.787
|
7.010
|
— | — | — |
No JSON data available for plots.