SCN Proteipedia

Hg_chrom7_TN10mRNA_13424

Organism: Heterodera glycines Gene Locus: chr7:1603536-1606182 Feature type: polypeptide

Protein Sequence

Length: 280

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.955	0.997	0.649	1.108	0.833	0.549	0.553	1.25	0.873	1.11	0.812	1.471	2.381	0.755	1.093	1.122	0.82	1.623	1.648	0.84	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12660	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	0.972

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	—	20-46	0.994	—	—	—	—	0.000	—	—	0.114	0.159	0.013	0.123	0.800	0.184	0.271	0.005	0.344	0.100

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010979	1.000	1.000	Hsc_gene_26404.t1	Hsc_gene_26398.t1;Hsc_gene_26398.t2;Hsc_gene_26404.t1	—	Q22267.1 Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase acl-2 [Caenorhabditis elegans]	KAI1714648.1 acyltransferase domain-containing protein [Ditylenchus destructor]	No	-0.070

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003841\|GO:0008654\|GO:0016020\|GO:0016746	GO:0008150_0.862\|GO:0009987_0.808\|GO:0005575_0.803\|GO:0110165_0.797\|GO:0003674_0.773\|GO:0016020_0.755\|GO:0071944_0.693\|GO:0005886_0.685\|GO:0008152_0.660\|GO:0044237_0.652\|GO:0044238_0.650\|GO:0009058_0.647\|GO:0003824_0.631\|GO:0006629_0.610\|GO:0008610_0.609\|GO:0044255_0.606\|GO:0016740_0.600\|GO:0005622_0.590\|GO:0016746_0.589\|GO:0044249_0.586\|GO:0016747_0.584\|GO:0043226_0.583\|GO:0042171_0.576\|GO:0071617_0.576\|GO:0005737_0.575\|GO:0043227_0.558\|GO:0043229_0.556\|GO:0046486_0.553\|GO:0045017_0.550\|GO:0043231_0.543\|GO:0003841_0.529\|GO:0008374_0.529\|GO:0016411_0.529\|GO:0006793_0.525\|GO:0006796_0.525\|GO:0019637_0.524\|GO:0090407_0.520\|GO:0006644_0.514\|GO:0008654_0.513	IPR002123+78-212_98-214+\|IPR004552+94-212+	SM00563+98-214+	PF01553+78-212+Acyltransferase	—	PTHR10434+19-271+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	280-280	1.000	1-279	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.774	31738.840	8.563	9.500	21.786	16.071	41.071	58.929	13.214	8.571	51.429

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	1194.858	1195.666	1159.889	1001.600	1313.994	1291.786	2436.357	992.159	1063.726	907.916	974.692

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.273	-0.392	—	0.360	—	0.926	-0.485	1.439	—	—	—	—	—

No JSON data available for plots.

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