SCN Proteipedia

Hg_chrom7_TN10mRNA_13427

Organism: Heterodera glycines Gene Locus: chr7:1626420-1636601 Feature type: polypeptide

Protein Sequence

Length: 1,184

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.756	1.021	1.09	0.699	1.478	1.213	0.694	1.267	1.032	1.164	1.011	1.54	1.15	0.926	1.672	1.086	0.803	0.729	0.455	0.447	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12663	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKDLKDEANFEQRKLKS,RRHSKYEKRHRRHRRLDR,RRNREKFSNQREHRRGRRP	—	—	—	—	—	—	0.000	—	—	0.933	0.076	0.006	0.212	0.027	0.011	0.013	0.035	0.056	0.007

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002390	2.000	2.000	Hsc_gene_26412.t1;Hsc_gene_26412.t2	Hsc_gene_26412.t1;Hsc_gene_26412.t2	—	P54816.3 Tat-binding homolog 7 [Caenorhabditis elegans]	KAI1723994.1 ATPase family associated with various cellular activities (AAA) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005524\|GO:0016887	GO:0005575_0.846\|GO:0110165_0.826\|GO:0008150_0.804\|GO:0005622_0.774\|GO:0009987_0.746\|GO:0016020_0.738\|GO:0043226_0.713\|GO:0003674_0.694\|GO:0043229_0.692\|GO:0065007_0.675\|GO:0050789_0.637\|GO:0043227_0.629\|GO:0043231_0.604\|GO:0005488_0.583\|GO:0050794_0.573\|GO:0008152_0.558\|GO:0043170_0.558\|GO:0005515_0.530\|GO:0071840_0.505	IPR001487+919-1034_935-1007_949-1011_958-974_974-992_992-1011+\|IPR003593+432-574+\|IPR003959+436-571+\|IPR003960+542-560+\|IPR018359+946-1003+\|IPR027417+396-668_397-665+\|IPR036427+913-1034_920-1047+\|IPR041569+599-640+\|IPR045199+38-673+	SM00297+919-1034+\|SM00382+432-574+	PF00004+436-571+ATPase_family_associated_with_various_cellular_activities_(AAA)\|PF00439+935-1007+Bromodomain\|PF17862+599-640+AAA+_lid_domain	G3DSA:3.40.50.300:FF:000061+395-577+ATPase_family,_AAA_domain-containing_2	PTHR23069+38-673+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-392;998-1127	2.000	393-997;1128-1184	5g4f_P	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.709	134302.960	7.502	15.000	32.264	8.784	53.885	46.115	17.399	14.865	46.875

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	1490.200	564.777	485.538	667.251	899.834	684.378	1320.547	394.275	835.566	4011.726	2650.515

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.448	—	0.568	0.400	-0.380	0.960	-0.903	1.887	—	—	—	—	—

No JSON data available for plots.

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