Hg_chrom7_TN10mRNA_13428
Organism: Heterodera glycines Gene Locus: chr7:1671727-1675880 Feature type: polypeptideProtein Sequence
Length: 436
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.533 | 1.067 | 0.876 | 0.87 | 1.911 | 2.176 | 0.683 | 1.261 | 1.478 | 1.023 | 1.772 | 1.214 | 1.593 | 0.265 | 0.655 | 0.623 | 0.714 | 0.799 | 0.529 | 0.675 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12664
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKMLQNVNDKRKNDR,RKLKNEIEKIQEKFDKK,KKQTKLTEAEAENRKLKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.388
|
0.074
|
0.007
|
0.601
|
0.379
|
0.123
|
0.078
|
0.024
|
0.161
|
0.334
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000023
|
32.000
|
1.000
|
Hsc_gene_2895.t1
|
Hsc_gene_17879.t1;Hsc_gene_18950.t1
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.959|GO:0003674_0.863|GO:0032502_0.773|GO:0048856_0.772|GO:0003824_0.708|GO:0009653_0.694|GO:0140096_0.684|GO:0048646_0.680|GO:0016740_0.675|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0051703_0.670|GO:0099120_0.670|GO:0016772_0.660|GO:0016301_0.656|GO:0016773_0.656|GO:0004672_0.655|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+201-393+|IPR003877+265-392_268-390+|IPR013320+201-393+|IPR043136+193-405+|IPR044736+252-389+
|
SM00449+265-392+
|
PF00622+268-390+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-173
|
1.000
|
174-436
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
50632.680
|
6.439
|
-0.500
|
33.716
|
11.239
|
55.505
|
44.495
|
17.431
|
16.284
|
37.615
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
88.189
|
6.519
|
32.124
|
19.730
|
19.118
|
12.285
|
14.311
|
17.394
|
23.900
|
322.348
|
194.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.072
|
1.462
|
-0.592
|
— | — | — | — | — |
-3.872
|
— |
-3.864
|
— | — |
No JSON data available for plots.