Hg_chrom7_TN10mRNA_13432
Organism: Heterodera glycines Gene Locus: chr7:1693194-1695034 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 0.526 | 0.823 | 0.624 | 0.377 | 0.58 | 0.485 | 0.905 | 1.508 | 1.773 | 0.686 | 1.597 | 2.137 | 0.522 | 2.309 | 1.422 | 0.742 | 1.028 | 3.133 | 0.133 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12668
|
— | — |
1.556
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
3.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— |
RRRR
|
22-43
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.392
|
0.612
|
0.029
|
0.599
|
0.113
|
0.193
|
0.155
|
0.363
|
0.157
|
0.159
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004457
|
3.000
|
0.000
|
0.000
|
Hsc_gene_12037.t1
|
— | — |
KAH7731669.1 RNA pseudouridylate synthase family protein [Aphelenchus avenae]
|
No
|
-0.340
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR032072+72-216_91-210+
|
— |
PF16065+91-210+Domain_of_unknown_function_(DUF4807)
|
— |
PTHR36693+72-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-221
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
25785.500
|
11.875
|
22.000
|
24.434
|
14.027
|
43.439
|
56.561
|
17.647
|
6.787
|
42.986
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
red
|
256.551
|
301.364
|
291.587
|
213.240
|
234.486
|
222.606
|
321.453
|
183.718
|
38.613
|
430.280
|
262.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.277
|
-0.636
|
-0.343
|
— | — |
0.540
|
-0.384
|
0.950
|
— | — | — | — | — |
No JSON data available for plots.