Hg_chrom7_TN10mRNA_13433
Organism: Heterodera glycines Gene Locus: chr7:1695496-1696898 Feature type: polypeptideProtein Sequence
Length: 263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 0.973 | 0.691 | 0.524 | 0.76 | 0.877 | 0.86 | 0.76 | 2.45 | 1.028 | 1.498 | 0.224 | 2.852 | 0.731 | 0.854 | 0.652 | 0.997 | 0.979 | 0.585 | 1.006 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12669
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KKILGLKIFLIRKTLK
|
30-50
|
0.961
|
— | — | — | — |
0.000
|
— | — |
0.409
|
0.117
|
0.038
|
0.465
|
0.534
|
0.125
|
0.121
|
0.034
|
0.103
|
0.564
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010982
|
1.000
|
1.000
|
Hsc_gene_15216.t1
|
Hsc_gene_15216.t1
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
WP_331921524
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.924|GO:0005575_0.902|GO:0110165_0.902|GO:0009987_0.862|GO:0016020_0.834|GO:0005622_0.828|GO:0005737_0.813|GO:0043226_0.793|GO:0043229_0.792|GO:0008152_0.777|GO:0043227_0.764|GO:0006810_0.756|GO:0044238_0.756|GO:0051179_0.756|GO:0051234_0.756|GO:0065007_0.750|GO:0043231_0.748|GO:0050789_0.736|GO:0050794_0.726|GO:0032501_0.725|GO:0071840_0.724|GO:0043170_0.721|GO:0016043_0.714|GO:0032502_0.714|GO:0048856_0.714|GO:0019538_0.712|GO:0009056_0.700|GO:0071705_0.700|GO:0048518_0.698|GO:0051641_0.697|GO:0019222_0.695|GO:0048519_0.694|GO:0048522_0.693|GO:0006996_0.691|GO:0030154_0.690|GO:0048523_0.690|GO:0048869_0.690|GO:0051649_0.690|GO:0044085_0.689|GO:0022414_0.688|GO:0080090_0.688|GO:0048468_0.687|GO:0060255_0.687|GO:0032879_0.686|GO:0033036_0.686|GO:0070727_0.685|GO:0008104_0.684|GO:0022607_0.684|GO:0042592_0.684|GO:0045184_0.684|GO:0009057_0.683|GO:0046907_0.683|GO:0051049_0.683|GO:0009893_0.682|GO:0015031_0.682|GO:0003006_0.681|GO:0009653_0.681|GO:0019953_0.680|GO:0010604_0.679|GO:0051246_0.679|GO:0006508_0.678|GO:0006886_0.678|GO:0009888_0.678|GO:0007155_0.677|GO:0009894_0.677|GO:0032880_0.677|GO:0045229_0.677|GO:0060341_0.677|GO:0030163_0.676|GO:0048646_0.676|GO:0007010_0.675|GO:0048609_0.675|GO:0098609_0.675|GO:0007276_0.674|GO:0007610_0.674|GO:0060429_0.674|GO:1903829_0.674|GO:0048871_0.673|GO:0002064_0.670|GO:0006511_0.670|GO:0006611_0.670|GO:0006913_0.670|GO:0007162_0.670|GO:0007281_0.670|GO:0007292_0.670|GO:0007299_0.670|GO:0007306_0.670|GO:0007631_0.670|GO:0009896_0.670|GO:0010498_0.670|GO:0010927_0.670|GO:0019941_0.670|GO:0022412_0.670|GO:0030155_0.670|GO:0030162_0.670|GO:0030536_0.670|GO:0030537_0.670|GO:0030707_0.670|GO:0030855_0.670|GO:0032386_0.670|GO:0032388_0.670|GO:0032434_0.670|GO:0032436_0.670|GO:0032989_0.670|GO:0033157_0.670|GO:0042176_0.670|GO:0043161_0.670|GO:0043632_0.670|GO:0045732_0.670|GO:0045862_0.670|GO:0046822_0.670|GO:0046824_0.670|GO:0046825_0.670|GO:0046827_0.670|GO:0046843_0.670|GO:0048477_0.670|GO:0051050_0.670|GO:0051168_0.670|GO:0051169_0.670|GO:0051222_0.670|GO:0051223_0.670|GO:0051247_0.670|GO:0051603_0.670|GO:0060249_0.670|GO:0060250_0.670|GO:0061136_0.670|GO:0070201_0.670|GO:0090136_0.670|GO:0090316_0.670|GO:1901800_0.670|GO:1903050_0.670|GO:1903052_0.670|GO:1904951_0.670|GO:2000058_0.670|GO:2000060_0.670|GO:0032991_0.624|GO:0005634_0.582|GO:1902494_0.563|GO:0140535_0.550|GO:1990234_0.547|GO:0000151_0.540|GO:0034657_0.540
|
IPR001870+57-257+|IPR003877+126-256_129-254+|IPR013320+76-257+|IPR043136+59-263+|IPR044736+114-253+
|
SM00449+126-256+
|
PF00622+129-254+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
30027.230
|
10.186
|
17.000
|
23.954
|
15.970
|
42.205
|
57.795
|
15.589
|
8.365
|
42.966
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
663.727
|
442.677
|
1154.491
|
798.223
|
687.057
|
784.258
|
353.226
|
1132.804
|
73.959
|
841.059
|
512.302
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.153
|
0.714
|
-0.424
|
-0.248
|
0.206
|
-1.145
|
0.425
|
-1.542
|
— | — | — | — | — |
No JSON data available for plots.