Hg_chrom7_TN10mRNA_13434
Organism: Heterodera glycines Gene Locus: chr7:1698310-1703183 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.403 | 1.187 | 1.097 | 0.8 | 0.503 | 0.952 | 1.188 | 1.276 | 0.619 | 1.003 | 0.809 | 1.501 | 0.902 | 1.026 | 1.278 | 1.293 | 0.989 | 0.668 | 1.071 | 0.409 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12670
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— | — |
7-27
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.236
|
0.185
|
0.038
|
0.581
|
0.099
|
0.175
|
0.238
|
0.019
|
0.743
|
0.207
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004515
|
1.000
|
2.000
|
Hsc_gene_26430.t1;Hsc_gene_26430.t2
|
Hsc_gene_26430.t1;Hsc_gene_26430.t2
|
— |
B3EWZ8.1 Ectin [Acropora millepora]
|
KAI1723295.1 cysteine-rich secretory protein family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.817|GO:0110165_0.811|GO:0008150_0.712|GO:0016020_0.601|GO:0043226_0.576|GO:0003674_0.555|GO:0043227_0.538
|
IPR001283+168-321+|IPR014044+165-323_171-303+|IPR034113+165-320+|IPR035940+159-334_160-321+
|
SM00198+165-323+
|
PF00188+171-303+Cysteine-rich_secretory_protein_family
|
G3DSA:3.40.33.10:FF:000010+162-334+Predicted_protein
|
PTHR10334+168-321+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-129;361-431
|
1.000
|
130-360
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.953
|
45824.460
|
9.277
|
16.500
|
23.202
|
8.585
|
47.100
|
52.900
|
14.153
|
9.049
|
60.325
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
330.146
|
1038.504
|
730.063
|
365.484
|
168.293
|
240.200
|
66.853
|
477.801
|
79.461
|
227.094
|
163.823
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.739
|
-1.644
|
-0.889
|
-1.150
|
0.528
|
-1.836
|
0.890
|
-2.696
|
— | — | — | — | — |
No JSON data available for plots.