SCN Proteipedia

Hg_chrom7_TN10mRNA_13435

Organism: Heterodera glycines Gene Locus: chr7:1713590-1720935 Feature type: polypeptide

Protein Sequence

Length: 710

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.065	1.146	0.615	1.408	0.423	1.12	0.922	1.901	1.064	1.161	0.341	1.574	0.978	0.894	1.092	1.368	1.247	1.131	0.758	0.746	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12671	—	—	1.222	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.787

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	54-74	0.925	33-66	0.985	—	—	0.000	—	—	0.074	0.073	0.015	0.092	0.343	0.239	0.163	0.065	0.872	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010983	1.000	1.000	Hsc_gene_26438.t1	Hsc_gene_26436.t1;Hsc_gene_26438.t1	—	Q20929.1 G-protein coupled receptor dmsr-1 [Caenorhabditis elegans]	KAI1723293.1 serpentine type 7TM GPCR chemoreceptor srw domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0008528\|GO:0016020	GO:0008150_0.969\|GO:0005575_0.925\|GO:0009987_0.924\|GO:0110165_0.920\|GO:0065007_0.906\|GO:0003674_0.891\|GO:0050789_0.889\|GO:0071944_0.883\|GO:0050794_0.871\|GO:0016020_0.857\|GO:0050896_0.851\|GO:0005886_0.850\|GO:0032501_0.846\|GO:0051716_0.817\|GO:0023052_0.815\|GO:0007154_0.808\|GO:0005488_0.803\|GO:0007165_0.782\|GO:0004888_0.768\|GO:0038023_0.768\|GO:0060089_0.768\|GO:0051239_0.731\|GO:0007186_0.705\|GO:0007610_0.690\|GO:0004930_0.674\|GO:0050795_0.670\|GO:0042277_0.662\|GO:0048583_0.662\|GO:0001653_0.655\|GO:0008528_0.654\|GO:0006950_0.644\|GO:0009628_0.628\|GO:0080134_0.612\|GO:0033554_0.611\|GO:0048511_0.607\|GO:0007623_0.601\|GO:0007218_0.600\|GO:0007622_0.593\|GO:0009266_0.593\|GO:0009408_0.593\|GO:0022410_0.593\|GO:0030431_0.593\|GO:0034605_0.593\|GO:0042745_0.593\|GO:0042749_0.593\|GO:0042752_0.593\|GO:0045187_0.593\|GO:0048512_0.593\|GO:0050802_0.593\|GO:0080135_0.593\|GO:1900034_0.593\|GO:0008188_0.576\|GO:0042923_0.576\|GO:0036477_0.533\|GO:0044297_0.521\|GO:0043025_0.510	IPR000276+34-58_43-560_66-87_119-141_486-510_527-553+\|IPR017452+49-545+\|IPR019427+38-260_469-560+\|IPR053219+5-562+	SM01381+43-560+	PF10324+38-260_469-560+Serpentine_type_7TM_GPCR_chemoreceptor_Srw	—	PTHR46273+5-562+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	316-392;673-710	2.000	1-315;393-672	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.895	76510.380	8.300	25.500	17.324	10.845	43.803	56.197	11.408	5.915	58.592

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	1210.686	1073.616	1213.856	776.649	238.997	732.929	733.099	1333.864	662.381	2511.336	1718.927

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.605	-0.537	-1.731	1.630	—	0.765	-0.724	-2.013	—	-2.964	—	—

No JSON data available for plots.

Back to Browser