SCN Proteipedia

Hg_chrom7_TN10mRNA_13437

Organism: Heterodera glycines Gene Locus: chr7:1763751-1766996 Feature type: polypeptide

Protein Sequence

Length: 342

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.816	1.36	1.063	1.714	0.536	1.425	0.557	1.17	1.559	1.581	0.62	1.032	1.056	1.181	1.432	0.752	0.575	1.108	1.574	0.258	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12673	—	—	1.556	1.000	2.000	1.000	1.000	2.000	2.000	2.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.589

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KKKTTKNNQLYVERIRKVR,KKTTKNNQLYVERIRKVRQ	—	—	—	—	—	—	0.000	—	—	0.129	0.076	0.097	0.234	0.215	0.275	0.048	0.197	0.798	0.285

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000434	6.000	2.000	Hsc_gene_10895.t1;Hsc_gene_17241.t1	Hsc_gene_17241.t1	—	—	KAF7637478.1 Fmp27_GFWDK domain-containing protein [Meloidogyne graminicola]	No	-0.260

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.952\|GO:0005575_0.898\|GO:0009987_0.895\|GO:0110165_0.891\|GO:0003674_0.865\|GO:0065007_0.857\|GO:0050789_0.838\|GO:0050794_0.815\|GO:0016020_0.810\|GO:0005622_0.802\|GO:0005488_0.781\|GO:0005886_0.756\|GO:0071944_0.756\|GO:0051179_0.754\|GO:0071840_0.750\|GO:0048518_0.746\|GO:0016043_0.744\|GO:0005737_0.740\|GO:0051234_0.739\|GO:0043226_0.738\|GO:0048522_0.738\|GO:0006810_0.736\|GO:0043229_0.723\|GO:0043227_0.704\|GO:0032879_0.703\|GO:0006996_0.699\|GO:0051049_0.696\|GO:0061024_0.690\|GO:0043231_0.686\|GO:0016192_0.685\|GO:0046903_0.684\|GO:0016050_0.682\|GO:0032940_0.681\|GO:0140352_0.681\|GO:0051046_0.680\|GO:0061025_0.677\|GO:1903530_0.677\|GO:0051050_0.675\|GO:0060627_0.675\|GO:0006906_0.674\|GO:0048284_0.674\|GO:0090174_0.674\|GO:0006887_0.670\|GO:0017157_0.670\|GO:0045055_0.670\|GO:0045921_0.670\|GO:0051047_0.670\|GO:0099500_0.670\|GO:0140029_0.670\|GO:1903305_0.670\|GO:1903307_0.670\|GO:1903532_0.670\|GO:0008289_0.659\|GO:0005543_0.655\|GO:0035091_0.650\|GO:0005773_0.625\|GO:0012505_0.622\|GO:0031090_0.587\|GO:0005783_0.567\|GO:0031984_0.557\|GO:0042175_0.552\|GO:0005789_0.551\|GO:0098827_0.551\|GO:0044232_0.540\|GO:0140268_0.540	IPR045167+31-141+\|IPR048872+43-143+	—	PF21675+43-143+BLTP2,_sixth_RBG_module	—	PTHR15678+31-141+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-342	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.802	38502.870	8.259	11.000	22.515	9.064	42.690	57.310	13.450	9.064	50.585

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	348.765	105.052	89.624	86.004	65.167	63.469	71.286	64.250	524.687	928.010	755.157

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.457	-0.426	—	-0.432	—	—	—	—	—	—	-3.372	—	—

No JSON data available for plots.

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