SCN Proteipedia

Hg_chrom7_TN10mRNA_13440

Organism: Heterodera glycines Gene Locus: chr7:1814542-1818587 Feature type: polypeptide

Protein Sequence

Length: 500

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.814	1.163	1.018	0.414	0.967	1.333	0.571	1.6	0.8	1.865	0.455	1.059	1.278	0.885	1.592	0.886	0.689	1.394	1.538	0.412	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12676	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	KKDAQLYVERIRKVRQ	19-39	0.999	—	—	—	—	0.000	—	—	0.209	0.261	0.055	0.216	0.811	0.313	0.221	0.070	0.263	0.079

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002108	2.000	2.000	Hsc_gene_10894.t1;Hsc_gene_10896.t1	Hsc_gene_10896.t1;Hsc_gene_17241.t1	—	—	KAF7637478.1 Fmp27_GFWDK domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.954\|GO:0005575_0.908\|GO:0110165_0.908\|GO:0009987_0.907\|GO:0003674_0.858\|GO:0065007_0.852\|GO:0016020_0.849\|GO:0050789_0.837\|GO:0005886_0.828\|GO:0071944_0.828\|GO:0050794_0.811\|GO:0005622_0.806\|GO:0005488_0.786\|GO:0051179_0.778\|GO:0051234_0.763\|GO:0043226_0.762\|GO:0006810_0.760\|GO:0071840_0.756\|GO:0016043_0.752\|GO:0048518_0.747\|GO:0043229_0.746\|GO:0005737_0.745\|GO:0048522_0.737\|GO:0043227_0.715\|GO:0006996_0.706\|GO:0032879_0.706\|GO:0043231_0.701\|GO:0051049_0.698\|GO:0016192_0.691\|GO:0061024_0.690\|GO:0046903_0.684\|GO:0016050_0.682\|GO:0032940_0.681\|GO:0140352_0.681\|GO:0051046_0.678\|GO:0061025_0.677\|GO:1903530_0.676\|GO:0048284_0.675\|GO:0060627_0.675\|GO:0006906_0.674\|GO:0051050_0.674\|GO:0090174_0.674\|GO:0006887_0.673\|GO:0099500_0.673\|GO:0140029_0.673\|GO:0017157_0.670\|GO:0045055_0.670\|GO:0045921_0.670\|GO:0051047_0.670\|GO:1903305_0.670\|GO:1903307_0.670\|GO:1903532_0.670\|GO:0008289_0.658\|GO:0005543_0.656\|GO:0005773_0.656\|GO:0012505_0.652\|GO:0035091_0.650\|GO:0031090_0.599\|GO:0005783_0.576\|GO:0031984_0.562\|GO:0005789_0.552\|GO:0042175_0.552\|GO:0098827_0.552\|GO:0044232_0.540\|GO:0140268_0.540	IPR045167+158-499+\|IPR048872+281-500+	—	PF21675+281-500+BLTP2,_sixth_RBG_module	—	PTHR15678+158-499+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-500	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.599	56884.300	7.063	5.000	25.400	11.200	46.000	54.000	14.000	11.400	47.800

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	215.134	133.782	76.552	69.376	78.171	78.286	130.925	84.044	61.868	650.633	398.305

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.034	-1.084	—	—	—	0.752	—	0.783	-3.506	—	—	—	—

No JSON data available for plots.

Back to Browser