Hg_chrom7_TN10mRNA_13443
Organism: Heterodera glycines Gene Locus: chr7:1833359-1836275 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.237 | 0.866 | 0.967 | 0.734 | 0.177 | 0.955 | 0.697 | 1.064 | 0.591 | 1.941 | 0.403 | 1.877 | 1.478 | 1.125 | 1.411 | 1.368 | 0.698 | 0.967 | 1.637 | 0.626 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12679
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.607
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
41-66
|
0.993
|
34-58
|
0.949
|
— | — |
0.000
|
— | — |
0.037
|
0.018
|
0.038
|
0.075
|
0.182
|
0.623
|
0.362
|
0.045
|
0.707
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000608
|
2.000
|
5.000
|
Hsc_gene_10905.t1;Hsc_gene_10907.t1;Hsc_gene_17239.t1;Hsc_gene_2252.t1;Hsc_gene_7811.t1
|
Hsc_gene_10905.t1;Hsc_gene_10906.t1
|
— |
Q3SYU3.1 Zinc transporter ZIP1 [Bos taurus]
|
EJW85043.1 ZIP Zinc transporter [Wuchereria bancrofti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0030001|GO:0046873|GO:0055085
|
GO:0008150_0.836|GO:0005575_0.777|GO:0110165_0.777|GO:0016020_0.735|GO:0003674_0.720|GO:0051179_0.663|GO:0009987_0.652|GO:0051234_0.651|GO:0006810_0.649|GO:0005886_0.600|GO:0071944_0.600|GO:0006811_0.583|GO:0006812_0.575|GO:0030001_0.573|GO:0000041_0.564|GO:0006829_0.560
|
IPR003689+29-136+
|
— |
PF02535+29-136+ZIP_Zinc_transporter
|
— |
PTHR11040+22-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
188-188
|
1.000
|
1-187
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
20716.050
|
9.610
|
8.000
|
18.085
|
11.702
|
39.362
|
60.638
|
11.702
|
6.383
|
53.723
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
53.760
|
58.620
|
54.245
|
41.020
|
37.990
|
51.378
|
50.639
|
27.225
|
23.357
|
97.263
|
65.589
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.651
|
— | — | — | — |
-1.022
|
1.033
|
— | — | — | — | — |
No JSON data available for plots.