SCN Proteipedia

Hg_chrom7_TN10mRNA_13448

Organism: Heterodera glycines Gene Locus: chr7:1871877-1888461 Feature type: polypeptide

Protein Sequence

Length: 2,003

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.801	1.219	1.117	0.585	0.932	1.383	0.666	2.047	0.965	1.39	0.651	1.351	1.29	0.787	1.386	1.127	0.81	0.961	1.267	0.529	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12684	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	endoplasmic_reticulum	—	KKDAQLYVERIRKVRQ	19-39	0.999	—	—	—	—	0.000	—	—	0.165	0.345	0.074	0.386	0.459	0.435	0.368	0.052	0.399	0.055

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000434	6.000	2.000	Hsc_gene_10895.t1;Hsc_gene_17241.t1	Hsc_gene_10896.t1;Hsc_gene_17241.t1	—	Q9VZS7.2 Protein hobbit [Drosophila melanogaster]	KAF7637478.1 Fmp27_GFWDK domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.927\|GO:0005575_0.875\|GO:0110165_0.868\|GO:0009987_0.845\|GO:0005622_0.813\|GO:0016020_0.760\|GO:0065007_0.751\|GO:0003674_0.746\|GO:0050789_0.729\|GO:0043226_0.725\|GO:0016043_0.722\|GO:0071840_0.722\|GO:0043229_0.718\|GO:0071944_0.715\|GO:0005737_0.713\|GO:0005886_0.710\|GO:0050794_0.707\|GO:0005488_0.684\|GO:0043227_0.684\|GO:0051179_0.679\|GO:0043231_0.662\|GO:0048518_0.638\|GO:0048522_0.618\|GO:0051234_0.611\|GO:0006810_0.607\|GO:0006996_0.599\|GO:0008289_0.543\|GO:0032879_0.543\|GO:0005543_0.538\|GO:0005773_0.530\|GO:0035091_0.530\|GO:0051049_0.528\|GO:0012505_0.524\|GO:0016192_0.524\|GO:0061024_0.522\|GO:0016050_0.515\|GO:0046903_0.509\|GO:0140352_0.508\|GO:0032940_0.505\|GO:0061025_0.505\|GO:0051046_0.504\|GO:0060627_0.503\|GO:0051050_0.502\|GO:0048284_0.501\|GO:1903530_0.501	IPR019441+537-668_537-669+\|IPR019443+1490-1947+\|IPR045167+159-1959+\|IPR048872+286-525+	SM01214+537-669+	PF10347+537-668+Fmp27/BLTP2/Hobbit,_GFWDK_motif-containg_RBG_unit\|PF10351+1490-1947+BLTP2/FMP27/Hobbit,_C-terminal\|PF21675+286-525+BLTP2,_sixth_RBG_module	—	PTHR15678+159-1959+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	952-1003;1063-1185;1455-1501;1994-2003	4.000	1-951;1004-1062;1186-1454;1502-1993	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.674	226887.840	7.161	28.000	26.910	12.182	50.374	49.626	15.177	11.732	48.827

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	425.949	693.321	356.923	316.675	405.389	330.793	713.980	270.458	155.992	588.707	403.257

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.187	-1.268	—	0.326	-0.280	1.121	-0.396	1.544	—	—	—	—	—

No JSON data available for plots.

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