Hg_chrom7_TN10mRNA_13451
Organism: Heterodera glycines Gene Locus: chr7:1911568-1912635 Feature type: polypeptideProtein Sequence
Length: 273
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.298 | 1.107 | 0.999 | 0.632 | 2.015 | 0.939 | 0.741 | 0.916 | 2.116 | 0.594 | 1.776 | 2.155 | 1.526 | 0.352 | 0.523 | 0.733 | 0.721 | 1.277 | 0.845 | 0.97 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12687
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRHSVNVKQSDTVEALKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.620
|
0.280
|
0.009
|
0.560
|
0.156
|
0.260
|
0.059
|
0.001
|
0.228
|
0.254
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000607
|
3.000
|
4.000
|
Hsc_gene_10893.t1;Hsc_gene_26409.t1;Hsc_gene_3268.t1;Hsc_gene_6041.t1
|
— | — | — |
KAJ0817828.1 putative Ubiquitin-like domain-containing protein [Helianthus annuus]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.765|GO:0110165_0.765|GO:0005622_0.747|GO:0043226_0.688|GO:0043229_0.680|GO:0016020_0.664|GO:0005737_0.644|GO:0043227_0.631|GO:0043231_0.608|GO:0008150_0.589
|
IPR000626+19-91_19-94_26-92_96-160_108-174_108-178+|IPR029071+18-94_98-175+
|
SM00213+19-94_108-178+
|
PF00240+26-92_108-174+Ubiquitin_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-273
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
31678.370
|
5.069
|
-6.500
|
33.700
|
11.722
|
51.648
|
48.352
|
16.117
|
17.582
|
40.659
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
28.678
|
0.922
|
15.984
|
50.377
|
6.442
|
3.510
|
0.202
|
2.324
|
124.415
|
2.243
|
54.603
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.895
|
5.640
|
1.763
|
-2.999
|
— |
-4.096
|
— |
-3.367
|
— | — | — | — | — |
No JSON data available for plots.