Hg_chrom7_TN10mRNA_13452
Organism: Heterodera glycines Gene Locus: chr7:1914275-1917868 Feature type: polypeptideProtein Sequence
Length: 182
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.533 | 0.767 | 1.199 | 0.568 | 1.374 | 1.832 | 0.981 | 1.374 | 1.221 | 0.891 | 0.666 | 1.939 | 0.916 | 0.423 | 1.458 | 0.471 | 0.631 | 1.166 | 0.423 | 0.323 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12688
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.543
|
0.226
|
0.136
|
0.413
|
0.032
|
0.115
|
0.077
|
0.008
|
0.064
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010988
|
2.000
|
0.000
|
0.000
|
Hsc_gene_17244.t1;Hsc_gene_17244.t2
|
— |
Q6NZR5.1 Superkiller complex protein 2 [Mus musculus]
|
KAH7698472.1 helicase, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.914|GO:0005575_0.872|GO:0110165_0.864|GO:0005622_0.808|GO:0009987_0.778|GO:0003674_0.754|GO:0008152_0.715|GO:0044238_0.687|GO:0043170_0.654|GO:0006139_0.642|GO:0044237_0.625|GO:0090304_0.621|GO:0009058_0.618|GO:0016070_0.617|GO:0003824_0.594|GO:0044249_0.588|GO:0016020_0.582|GO:0065007_0.575|GO:0009059_0.572|GO:0010467_0.567|GO:0050789_0.560|GO:0050794_0.549|GO:0043226_0.543|GO:0043229_0.537|GO:0009056_0.520|GO:0016787_0.517
|
IPR012961+23-178_38-173+|IPR050699+35-177+
|
SM01142+23-178+
|
PF08148+38-173+DSHCT_(NUC185)_domain
|
— |
PTHR12131+35-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-66
|
1.000
|
67-182
|
9g8q_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
19977.570
|
5.318
|
-3.500
|
29.121
|
7.692
|
46.703
|
53.297
|
14.286
|
14.835
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
red
|
111.459
|
155.445
|
54.444
|
82.082
|
97.778
|
101.209
|
172.266
|
98.268
|
16.586
|
189.632
|
115.469
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.743
|
-1.058
|
0.702
|
— | — |
0.777
|
— |
0.948
|
— | — | — | — | — |
No JSON data available for plots.