Hg_chrom7_TN10mRNA_13453
Organism: Heterodera glycines Gene Locus: chr7:1919121-1922954 Feature type: polypeptideProtein Sequence
Length: 182
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.533 | 0.639 | 1.099 | 0.568 | 1.374 | 1.832 | 1.047 | 1.374 | 1.221 | 0.965 | 0.583 | 1.939 | 0.916 | 0.423 | 1.458 | 0.471 | 0.721 | 1.166 | 0.423 | 0.323 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12689
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.551
|
0.221
|
0.149
|
0.404
|
0.032
|
0.124
|
0.069
|
0.011
|
0.058
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010988
|
2.000
|
0.000
|
0.000
|
Hsc_gene_17244.t1;Hsc_gene_17244.t2
|
— |
Q6NZR5.1 Superkiller complex protein 2 [Mus musculus]
|
KAH7698472.1 helicase, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.912|GO:0005575_0.871|GO:0110165_0.863|GO:0005622_0.799|GO:0009987_0.779|GO:0003674_0.754|GO:0008152_0.714|GO:0044238_0.686|GO:0043170_0.652|GO:0006139_0.641|GO:0044237_0.627|GO:0090304_0.620|GO:0009058_0.619|GO:0016070_0.616|GO:0003824_0.597|GO:0044249_0.588|GO:0016020_0.575|GO:0065007_0.574|GO:0009059_0.572|GO:0010467_0.567|GO:0050789_0.558|GO:0050794_0.547|GO:0043226_0.533|GO:0043229_0.529|GO:0009056_0.521|GO:0016787_0.515
|
IPR012961+23-178_38-173+|IPR050699+35-177+
|
SM01142+23-178+
|
PF08148+38-173+DSHCT_(NUC185)_domain
|
— |
PTHR12131+35-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-53
|
1.000
|
54-182
|
9g8r_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
19891.520
|
5.307
|
-3.500
|
28.022
|
7.692
|
45.604
|
54.396
|
13.736
|
14.286
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkorange
|
345.050
|
380.909
|
198.497
|
295.863
|
329.583
|
304.812
|
282.887
|
147.634
|
57.167
|
739.151
|
446.872
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.171
|
-0.502
|
0.685
|
— | — | — |
-1.151
|
1.081
|
— | — | — | — | — |
No JSON data available for plots.