SCN Proteipedia

Hg_chrom7_TN10mRNA_13465

Organism: Heterodera glycines Gene Locus: chr7:2024046-2029693 Feature type: polypeptide

Protein Sequence

Length: 650

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.234	1.002	0.923	0.637	0.974	1.381	0.916	1.462	1.197	1.102	0.956	1.81	1.368	0.621	1.068	0.791	0.958	0.909	0.592	0.543	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12701	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	18-ppJ2_pJ2_J3_J4_Male	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	5-25	0.987	—	—	—	—	0.000	—	—	0.129	0.866	0.014	0.190	0.037	0.127	0.103	0.133	0.117	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003138	2.000	1.000	Hsc_gene_23770.t1	Hsc_gene_23770.t1	—	P45953.1 Very long-chain specific acyl-CoA dehydrogenase, mitochondrial [Rattus norvegicus]	KAI1719984.1 acyl-CoA dehydrogenase, middle domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003995\|GO:0016627\|GO:0050660	GO:0005575_0.810\|GO:0110165_0.797\|GO:0005622_0.729\|GO:0003674_0.712\|GO:0016020_0.697\|GO:0008150_0.684\|GO:0005737_0.674\|GO:0043226_0.612\|GO:0009987_0.610\|GO:0003824_0.607\|GO:0043229_0.604\|GO:0043227_0.579\|GO:0043231_0.558\|GO:0008152_0.527\|GO:0044238_0.515\|GO:0016491_0.504	IPR006089+217-229_436-455+\|IPR006091+215-316+\|IPR009075+328-474+\|IPR009100+90-341+\|IPR013786+103-211+\|IPR036250+326-474+\|IPR037069+95-213+\|IPR046373+214-327+\|IPR049448+522-639+	—	PF00441+328-474+Acyl-CoA_dehydrogenase,_C-terminal_domain\|PF02770+215-316+Acyl-CoA_dehydrogenase,_middle_domain\|PF02771+103-211+Acyl-CoA_dehydrogenase,_N-terminal_domain\|PF21343+522-639+ACAD9/ACADV,_C-terminal_domain	G3DSA:1.10.540.10:FF:000001+96-213+Very_long-chain-specific_acyl-CoA_dehydrogenase,_mitochondrial\|G3DSA:1.20.140.10:FF:000008+328-474+acyl-CoA_dehydrogenase_family_member_9,_mitochondrial\|G3DSA:2.40.110.10:FF:000006+214-327+very_long-chain_specific_acyl-CoA_dehydrogenase,_mitochondrial	PTHR43884+78-483+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	644-650	1.000	1-643	2z1q_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.687	71630.840	8.107	13.500	25.385	10.462	46.462	53.538	14.462	10.923	50.154

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	greenyellow	1882.310	861.253	2480.102	1517.405	1711.883	2398.566	1610.470	3565.401	1021.211	2164.791	1674.685

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.298	0.680	-0.601	0.142	0.501	-0.567	0.470	-1.007	—	—	—	—	—

No JSON data available for plots.

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