Hg_chrom7_TN10mRNA_13466
Organism: Heterodera glycines Gene Locus: chr7:2047487-2050306 Feature type: polypeptideProtein Sequence
Length: 561
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.394 | 0.995 | 0.94 | 0.307 | 2.377 | 0.548 | 0.573 | 1.337 | 1.743 | 1.204 | 2.188 | 1.468 | 1.337 | 0.514 | 0.8 | 0.713 | 0.468 | 0.648 | 1.097 | 1.101 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12702
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KRMSAKGVIDYLEGKCKPK,HRKNKAEKKAKEEKERKEREREEKERKEREREEKERAKTI
|
— | — | — | — |
1-23
|
0.995
|
1.000
|
0.000
|
0.000
|
0.451
|
0.117
|
0.007
|
0.581
|
0.166
|
0.200
|
0.265
|
0.002
|
0.338
|
0.412
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002392
|
2.000
|
2.000
|
Hsc_gene_1928.t1;Hsc_gene_1932.t1
|
— | — | — |
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
KAI3505248
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
— |
IPR000719+62-461+|IPR011009+93-465+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
212-277
|
2.000
|
1-211;278-561
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
66498.470
|
6.681
|
1.500
|
40.463
|
12.656
|
54.724
|
45.276
|
21.034
|
19.430
|
33.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
491.740
|
1.458
|
71.599
|
860.288
|
70.792
|
6.970
|
2.432
|
5.596
|
1841.527
|
388.040
|
1010.963
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.398
|
9.072
|
3.690
|
-3.638
|
-3.329
|
— | — | — | — | — | — | — | — |