Hg_chrom7_TN10mRNA_13467
Organism: Heterodera glycines Gene Locus: chr7:2051767-2054931 Feature type: polypeptideProtein Sequence
Length: 214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.521 | 1.304 | 1.02 | 0.806 | 1.09 | 0.599 | 0.89 | 1.402 | 1.142 | 1.894 | 0.425 | 1.374 | 0.909 | 0.629 | 0.954 | 0.534 | 0.766 | 0.92 | 0.359 | 1.1 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12703
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.409
|
0.201
|
0.024
|
0.399
|
0.446
|
0.142
|
0.202
|
0.026
|
0.132
|
0.478
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004519
|
1.000
|
2.000
|
Hsc_gene_17248.t1;Hsc_gene_3386.t1
|
Hsc_gene_3386.t1
|
— | — |
WP_335536909.1 ankyrin repeat domain-containing protein, partial [Neobacillus niacini]
|
No
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.857|GO:0110165_0.847|GO:0008150_0.775|GO:0005622_0.661|GO:0005737_0.661|GO:0016020_0.642|GO:0003674_0.595|GO:0043226_0.588|GO:0009987_0.574|GO:0043227_0.570|GO:0008152_0.521
|
IPR002110+78-131_84-113_87-116_117-160_150-185_164-194_164-196+|IPR036770+19-136_55-198_137-212+|IPR050663+64-194+
|
SM00248+84-113_117-160_164-194+
|
PF12796+78-131+Ankyrin_repeats_(3_copies)|PF13637+150-185+Ankyrin_repeats_(many_copies)
|
— |
PTHR24193+64-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-214
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
23282.660
|
4.751
|
-7.000
|
22.430
|
10.280
|
38.785
|
61.215
|
10.280
|
12.150
|
51.869
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
6.551
|
2.165
|
3.378
|
1.486
|
1.237
|
1.994
|
4.253
|
2.190
|
1.028
|
21.625
|
12.797
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.