Hg_chrom7_TN10mRNA_13468
Organism: Heterodera glycines Gene Locus: chr7:2055586-2069471 Feature type: polypeptideProtein Sequence
Length: 1,112
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.91 | 0.878 | 0.899 | 0.744 | 0.944 | 0.992 | 0.717 | 1.169 | 1.079 | 1.495 | 0.463 | 1.904 | 1.424 | 0.865 | 1.376 | 1.092 | 1.061 | 1.008 | 1.176 | 0.741 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12704
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.909
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.122
|
0.110
|
0.008
|
0.114
|
0.474
|
0.668
|
0.595
|
0.018
|
0.566
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010990
|
1.000
|
1.000
|
Hsc_gene_11735.t1
|
Hsc_gene_11735.t1;Hsc_gene_9617.t1
|
— |
Q9XWL9.3 Patched-related protein 18 [Caenorhabditis elegans]
|
KAI3410014.1 MMPL [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.840|GO:0110165_0.833|GO:0008150_0.831|GO:0016020_0.773|GO:0071944_0.763|GO:0005886_0.749|GO:0009987_0.656|GO:0032501_0.580|GO:0051179_0.529
|
IPR000731+395-558+|IPR003392+158-1008+|IPR051697+127-1027+
|
— |
PF02460+158-1008+Patched_family
|
G3DSA:1.20.1640.10:FF:000013+802-1011+PaTched_Related_family
|
PTHR10796+127-1027+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-112;1111-1112
|
1.000
|
113-1110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
124652.090
|
6.749
|
4.000
|
22.752
|
11.511
|
44.514
|
55.486
|
12.140
|
10.612
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
2083.670
|
2490.016
|
1240.673
|
1497.688
|
1097.889
|
1643.366
|
1074.904
|
2074.097
|
591.135
|
4503.215
|
2826.609
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.235
|
-0.870
|
0.380
|
-0.479
|
0.597
|
-0.604
|
0.230
|
-0.807
|
— | — | — | — | — |
No JSON data available for plots.