Hg_chrom7_TN10mRNA_13470
Organism: Heterodera glycines Gene Locus: chr7:2082559-2089843 Feature type: polypeptideProtein Sequence
Length: 729
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 1.563 | 0.673 | 0.899 | 0.937 | 1.442 | 0.98 | 1.166 | 1.036 | 0.982 | 0.353 | 1.13 | 1.029 | 1.53 | 1.4 | 0.999 | 0.944 | 0.998 | 0.633 | 0.726 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12706
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RRFFRPIPAEERELRQRQR
|
— | — | — | — |
1-24
|
0.996
|
1.000
|
1.000
|
1.000
|
0.089
|
0.018
|
0.017
|
0.245
|
0.182
|
0.293
|
0.377
|
0.076
|
0.845
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010991
|
1.000
|
1.000
|
Hsc_gene_18097.t1
|
Hsc_gene_18097.t1
|
— |
Q19707.1 Cuticlin-3 [Caenorhabditis elegans]
|
KAF7637016.1 ZP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.914|GO:0110165_0.914|GO:0071944_0.803|GO:0030312_0.580|GO:0031012_0.553|GO:0062023_0.552|GO:0060102_0.540
|
IPR001507+63-304_63-308_64-297+|IPR051962+47-607+
|
SM00241+63-308+
|
PF00100+64-297+Zona_pellucida-like_domain
|
— |
PTHR22907+47-607+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
306-533;714-729
|
2.000
|
1-305;534-713
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
79805.880
|
7.276
|
7.500
|
20.850
|
9.328
|
45.953
|
54.047
|
11.523
|
9.328
|
56.379
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
252.392
|
41.338
|
22.288
|
22.670
|
34.602
|
64.963
|
184.543
|
42.874
|
5.529
|
945.089
|
542.420
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.127
|
-1.004
|
— |
0.579
|
0.922
|
1.517
|
-0.712
|
2.251
|
-7.566
|
— |
-4.248
|
— | — |