Hg_chrom7_TN10mRNA_13471
Organism: Heterodera glycines Gene Locus: chr7:2093603-2096121 Feature type: polypeptideProtein Sequence
Length: 595
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 1.524 | 0.947 | 1.101 | 1.036 | 0.646 | 0.68 | 0.588 | 1.681 | 1.113 | 1.375 | 1.285 | 2.054 | 0.743 | 0.96 | 1.032 | 0.606 | 0.993 | 0.776 | 0.643 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12707
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.521
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.575
|
0.243
|
0.032
|
0.380
|
0.084
|
0.132
|
0.029
|
0.091
|
0.134
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001390
|
1.000
|
4.000
|
Hsc_gene_19246.t2;Hsc_gene_19266.t1;Hsc_gene_19266.t2;Hsc_gene_19268.t1
|
— | — |
Q2LE78.1 BTB/POZ domain-containing protein 6 [Xenopus laevis]
|
KAI3417397.1 BTB (POZ) domain containing 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.779|GO:0110165_0.761|GO:0008150_0.736|GO:0005622_0.667|GO:0009987_0.618|GO:0043226_0.596|GO:0003674_0.583|GO:0043229_0.583|GO:0016020_0.564|GO:0005737_0.552
|
IPR000210+10-120_19-96_19-127+|IPR002083+280-409_281-395_284-400_285-390_429-564_431-545_433-563+|IPR008974+274-417_418-575+|IPR011333+1-124_3-121+
|
SM00061+285-390_431-545+|SM00225+19-127+
|
PF00651+10-120+BTB/POZ_domain|PF22486+284-400_433-563+MATH_domain
|
— |
PTHR45774+4-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-595
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
67431.120
|
8.742
|
17.500
|
26.387
|
11.765
|
46.387
|
53.613
|
14.958
|
11.429
|
47.731
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
5.962
|
4.303
|
9.559
|
5.356
|
6.440
|
7.290
|
29.685
|
1.107
|
0.000
|
2.179
|
1.245
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.034
|
-2.826
|
4.888
|
— | — | — | — | — |
No JSON data available for plots.