Hg_chrom7_TN10mRNA_13473
Organism: Heterodera glycines Gene Locus: chr7:2102921-2104830 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.682 | 1.077 | 1.235 | 1.809 | 0.926 | 1.029 | 0.441 | 1.852 | 1.029 | 1.21 | 0.701 | 1.634 | 1.629 | 0.594 | 1.638 | 1.058 | 0.557 | 1.029 | 1.662 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12709
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— |
RRVHCQWCGQIYCHRCIRK
|
23-45
|
0.991
|
8-43
|
0.998
|
— | — |
0.000
|
— | — |
0.199
|
0.164
|
0.011
|
0.631
|
0.122
|
0.683
|
0.526
|
0.009
|
0.205
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010992
|
2.000
|
0.000
|
0.000
|
— | — |
G5ED68.1 Myotubularin-related protein 6 [Caenorhabditis elegans]
|
KAI1729151.1 myotubularin-like phosphatase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016311|GO:0046872
|
GO:0008150_0.903|GO:0005575_0.841|GO:0003674_0.840|GO:0110165_0.838|GO:0009987_0.837|GO:0005622_0.749|GO:0065007_0.703|GO:0050789_0.690|GO:0050794_0.676|GO:0005737_0.672|GO:0003824_0.617|GO:0008152_0.592|GO:0044237_0.565|GO:0044238_0.554|GO:0016787_0.515
|
IPR000306+259-321+|IPR010569+1-212_37-159+|IPR011011+259-322+|IPR013083+253-323+|IPR016130+43-53+|IPR017455+273-320+|IPR029021+38-215+|IPR030564+37-236+
|
— |
PF01363+259-321+FYVE_zinc_finger|PF06602+37-159+Myotubularin-like_phosphatase_domain
|
— |
PTHR10807+37-236+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-324
|
4y7i_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
37751.250
|
7.505
|
7.000
|
28.704
|
14.506
|
48.148
|
51.852
|
16.358
|
12.346
|
46.914
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
42.710
|
9.327
|
9.483
|
8.476
|
11.842
|
7.955
|
36.536
|
21.252
|
46.243
|
112.849
|
84.303
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.217
|
1.318
|
0.928
|
— | — |
-3.070
|
— | — |
No JSON data available for plots.