Hg_chrom7_TN10mRNA_13476
Organism: Heterodera glycines Gene Locus: chr7:2117532-2122539 Feature type: polypeptideProtein Sequence
Length: 462
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 1.661 | 0.945 | 1.194 | 0.902 | 1.388 | 0.644 | 0.974 | 1.299 | 0.995 | 1.41 | 1.273 | 1.263 | 0.791 | 0.928 | 0.928 | 0.532 | 0.853 | 0.833 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12712
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
RKKRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.433
|
0.567
|
0.060
|
0.350
|
0.062
|
0.017
|
0.099
|
0.057
|
0.098
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004521
|
1.000
|
2.000
|
Hsc_gene_17808.t1;Hsc_gene_20472.t1
|
Hsc_gene_17808.t1
|
— |
Q0V9W6.2 BTB/POZ domain-containing protein 6 [Xenopus tropicalis]
|
KAI3416309.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.784|GO:0110165_0.784|GO:0005622_0.689|GO:0043226_0.603|GO:0043229_0.596|GO:0008150_0.587|GO:0005737_0.585|GO:0009987_0.531
|
IPR000210+19-73+|IPR011333+1-116_15-72+
|
— |
PF00651+19-73+BTB/POZ_domain
|
— |
PTHR45774+19-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
362-462
|
1.000
|
1-361
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
51994.560
|
9.018
|
19.500
|
26.407
|
10.606
|
48.701
|
51.299
|
15.801
|
10.606
|
49.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
202.701
|
1.301
|
2.711
|
2.588
|
5.857
|
6.362
|
3.341
|
3.465
|
2.410
|
875.399
|
501.261
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-8.632
|
— |
-6.882
|
— | — |
No JSON data available for plots.