Hg_chrom7_TN10mRNA_13479
Organism: Heterodera glycines Gene Locus: chr7:2133522-2138742 Feature type: polypeptideProtein Sequence
Length: 447
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.093 | 0.884 | 0.732 | 0.771 | 0.373 | 0.918 | 0.906 | 2.013 | 1.392 | 1.663 | 0.576 | 1.448 | 1.989 | 1.076 | 0.867 | 0.799 | 0.587 | 1.152 | 1.721 | 0.658 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12715
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-28
|
0.833
|
1.000
|
6.000
|
6.000
|
0.059
|
0.040
|
0.012
|
0.189
|
0.424
|
0.447
|
0.368
|
0.003
|
0.535
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001391
|
4.000
|
1.000
|
Hsc_gene_26654.t1
|
— | — | — |
KAF7637015.1 Cytochrome b561 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.964|GO:0003674_0.678|GO:0009987_0.629|GO:0005575_0.619|GO:0110165_0.619|GO:0016020_0.606|GO:0051179_0.502
|
IPR005018+56-184_72-184_87-184+|IPR006593+210-427_250-388+|IPR051237+73-419+
|
SM00664+87-184+|SM00665+250-388+
|
PF03351+72-184+DOMON_domain
|
— |
PTHR45828+73-419+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-447
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
49574.100
|
8.775
|
17.000
|
18.345
|
15.660
|
34.899
|
65.101
|
12.081
|
6.264
|
49.441
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
605.812
|
147.075
|
136.904
|
325.379
|
875.299
|
1677.824
|
723.087
|
696.903
|
66.250
|
882.314
|
532.572
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.334
|
1.008
|
1.359
|
1.395
|
0.954
|
-1.206
|
-1.386
|
— |
-3.864
|
— | — | — | — |