Hg_chrom7_TN10mRNA_13482
Organism: Heterodera glycines Gene Locus: chr7:2156288-2159209 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.15 | 0.818 | 0.48 | 0.682 | 0.696 | 0.902 | 0.785 | 0.879 | 2.149 | 1.693 | 0.533 | 1.81 | 2.015 | 0.507 | 0.718 | 1.256 | 0.576 | 1.166 | 1.014 | 0.711 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12717
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.889
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.084
|
0.075
|
0.026
|
0.087
|
0.247
|
0.394
|
0.361
|
0.020
|
0.722
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001310
|
2.000
|
3.000
|
Hsc_gene_5130.t1;Hsc_gene_6039.t1;Hsc_gene_6039.t2
|
Hsc_gene_5143.t1;Hsc_gene_6039.t1;Hsc_gene_6039.t2;Hsc_gene_9621.t1
|
— |
Q9NRM0.2 Solute carrier family 2, facilitated glucose transporter member 9 [Homo sapiens]
|
KAI6187894.1 MFS domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0005575_0.881|GO:0110165_0.881|GO:0016020_0.860|GO:0008150_0.840|GO:0005886_0.789|GO:0071944_0.789|GO:0009987_0.770|GO:0006810_0.735|GO:0051179_0.735|GO:0051234_0.735|GO:0055085_0.685|GO:0003674_0.656|GO:0005215_0.613|GO:0022857_0.613
|
IPR005828+6-432+|IPR005829+289-305+|IPR020846+1-424+|IPR036259+1-437_24-431+|IPR045263+3-449+
|
— |
PF00083+6-432+Sugar_(and_other)_transporter
|
— |
PTHR23503+3-449+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
432-455
|
1.000
|
1-431
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
49983.980
|
7.597
|
5.000
|
15.604
|
12.747
|
34.945
|
65.055
|
8.791
|
6.813
|
47.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkred
|
325.393
|
2.753
|
5.427
|
3.173
|
348.816
|
800.321
|
77.225
|
217.069
|
0.000
|
878.050
|
501.743
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
6.742
|
1.215
|
-3.368
|
-1.997
|
-1.349
|
-7.227
|
— | — | — | — |
No JSON data available for plots.