Hg_chrom7_TN10mRNA_13483
Organism: Heterodera glycines Gene Locus: chr7:2162635-2167653 Feature type: polypeptideProtein Sequence
Length: 405
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.952 | 0.763 | 0.341 | 1.44 | 1.773 | 0.852 | 1.235 | 1.372 | 1.034 | 1.085 | 1.162 | 1.303 | 0.665 | 0.756 | 1.199 | 0.769 | 0.748 | 0.57 | 0.654 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12718
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-24
|
0.974
|
1.000
|
0.000
|
0.000
|
0.288
|
0.104
|
0.012
|
0.581
|
0.220
|
0.248
|
0.156
|
0.019
|
0.274
|
0.463
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002393
|
3.000
|
1.000
|
Hsc_gene_4149.t1
|
Hsc_gene_6038.t1;Hsc_gene_6038.t2;Hsc_gene_6038.t4
|
— | — |
KAI3407415.1 Ran-binding protein 10 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.760|GO:0005575_0.642|GO:0110165_0.639|GO:0005622_0.582|GO:0009987_0.531|GO:0005737_0.506
|
IPR001870+189-383+|IPR003877+250-382_253-380+|IPR013320+209-384+|IPR043136+184-395+|IPR044736+239-379+|IPR050618+133-394+
|
SM00449+250-382+
|
PF00622+253-380+SPRY_domain
|
— |
PTHR12864+133-394+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-184
|
1.000
|
185-405
|
8bv0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
45456.810
|
6.022
|
-3.000
|
26.173
|
10.123
|
54.568
|
45.432
|
13.333
|
12.840
|
47.654
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
310.662
|
1.754
|
16.415
|
559.358
|
192.716
|
16.592
|
26.892
|
13.943
|
489.427
|
681.700
|
599.297
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.994
|
8.175
|
5.204
|
-1.567
|
-3.524
|
— | — |
1.093
|
— | — | — | — | — |