Hg_chrom7_TN10mRNA_13484
Organism: Heterodera glycines Gene Locus: chr7:2168515-2175811 Feature type: polypeptideProtein Sequence
Length: 826
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.802 | 1.042 | 1.211 | 0.584 | 1.251 | 1.086 | 0.879 | 1.332 | 0.861 | 1.26 | 0.624 | 1.424 | 1.412 | 0.931 | 1.359 | 0.899 | 1.012 | 0.954 | 1.211 | 0.534 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12719
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.270
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
SSKRHKKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.208
|
0.269
|
0.022
|
0.654
|
0.123
|
0.238
|
0.336
|
0.047
|
0.400
|
0.312
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000435
|
4.000
|
4.000
|
Hsc_gene_26670.t1;Hsc_gene_26670.t2;Hsc_gene_26670.t3;Hsc_gene_26670.t4
|
— | — |
C8YR32.1 Lipoxygenase homology domain-containing protein 1 [Mus musculus]
|
KAI1733284.1 PLAT/LH2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.951|GO:0005575_0.630|GO:0110165_0.630|GO:0016020_0.534
|
IPR001024+99-250_101-196_269-385+|IPR036392+99-242_284-372+|IPR052970+76-402+
|
— |
PF01477+101-196+PLAT/LH2_domain
|
— |
PTHR45901+76-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-98
|
1.000
|
99-826
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
92732.450
|
5.208
|
-17.000
|
27.603
|
11.138
|
48.789
|
51.211
|
13.438
|
14.165
|
50.726
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
270.906
|
225.696
|
303.519
|
82.105
|
32.213
|
24.503
|
150.654
|
180.257
|
758.836
|
241.482
|
463.205
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.198
|
-1.596
|
-1.777
|
-1.384
|
— |
2.633
|
2.778
|
— | — |
-3.037
|
— | — | — |
No JSON data available for plots.