Hg_chrom7_TN10mRNA_13486
Organism: Heterodera glycines Gene Locus: chr7:2178329-2183445 Feature type: polypeptideProtein Sequence
Length: 465
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.1 | 1.35 | 0.704 | 0.667 | 0.43 | 0.882 | 0.819 | 2.043 | 1.147 | 1.511 | 0.652 | 1.139 | 1.434 | 1.075 | 1.053 | 0.86 | 0.67 | 1.206 | 1.985 | 0.822 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12721
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RQAKRKT,KRKTRHHVPICSQWSRRGR,RKTRHHVPICSQWSRRGRT
|
15-47
|
0.974
|
5-46
|
0.959
|
— | — |
0.000
|
— | — |
0.064
|
0.026
|
0.005
|
0.192
|
0.217
|
0.412
|
0.351
|
0.006
|
0.583
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001391
|
4.000
|
1.000
|
Hsc_gene_26654.t1
|
— | — | — |
KAF7637015.1 Cytochrome b561 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.964|GO:0003674_0.694|GO:0009987_0.634|GO:0005575_0.626|GO:0110165_0.626|GO:0016020_0.602
|
IPR005018+32-158_44-158_61-158+|IPR006593+184-399_224-361+|IPR051237+38-393+
|
SM00664+61-158+|SM00665+224-361+
|
PF03188+224-361+Eukaryotic_cytochrome_b561|PF03351+44-158+DOMON_domain
|
— |
PTHR45828+38-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-465
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
51789.990
|
9.635
|
23.500
|
20.000
|
14.624
|
39.355
|
60.645
|
13.548
|
6.452
|
51.613
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
344.617
|
108.535
|
81.375
|
222.221
|
631.772
|
1247.498
|
582.272
|
623.301
|
15.860
|
184.438
|
112.190
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.647
|
0.897
|
1.560
|
1.474
|
0.996
|
-1.090
|
-1.119
|
— |
-3.643
|
4.021
|
— | — | — |
No JSON data available for plots.