Hg_chrom7_TN10mRNA_13489
Organism: Heterodera glycines Gene Locus: chr7:2234536-2239331 Feature type: polypeptideProtein Sequence
Length: 529
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.011 | 0.835 | 1.169 | 1.369 | 0.914 | 0.969 | 0.473 | 1.796 | 0.378 | 1.533 | 0.544 | 1.557 | 1.89 | 0.763 | 1.659 | 1.053 | 0.93 | 0.716 | 1.454 | 0.778 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12724
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.608
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-21
|
0.993
|
1.000
|
0.000
|
0.000
|
0.270
|
0.354
|
0.014
|
0.465
|
0.196
|
0.140
|
0.218
|
0.192
|
0.132
|
0.398
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004522
|
1.000
|
2.000
|
Hsc_gene_6028.t1;Hsc_gene_6028.t2
|
Hsc_gene_6028.t1
|
— | — |
KAI1728208.1 cartilage-associated protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.899|GO:0005575_0.886|GO:0110165_0.737|GO:0009987_0.631|GO:0016020_0.584|GO:0065007_0.579|GO:0050789_0.564|GO:0071944_0.563|GO:0005622_0.524
|
IPR052284+20-382+
|
— | — | — |
PTHR13986+20-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-529
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
60833.260
|
7.296
|
8.500
|
27.221
|
14.934
|
47.637
|
52.363
|
15.312
|
11.909
|
48.393
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
543.721
|
407.763
|
231.826
|
479.542
|
214.879
|
278.846
|
185.800
|
497.374
|
11.182
|
1509.380
|
867.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.044
|
— |
1.157
|
-1.188
|
0.390
|
-0.576
|
0.730
|
-1.278
|
-7.194
|
5.620
|
— | — | — |