SCN Proteipedia

Hg_chrom7_TN10mRNA_13490

Organism: Heterodera glycines Gene Locus: chr7:2241815-2246873 Feature type: polypeptide

Protein Sequence

Length: 534

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.958	1.132	0.715	1.033	0.562	1.008	0.78	1.311	0.916	0.962	0.653	1.322	1.404	0.972	1.338	1.873	1.197	0.766	1.296	0.551	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12725	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	golgi_apparatus	—	KKYAAKRYQLSRHFRK	—	—	102-122	0.992	—	—	0.000	—	—	0.133	0.489	0.082	0.339	0.280	0.496	0.574	0.117	0.283	0.051

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000434	6.000	2.000	Hsc_gene_10895.t1;Hsc_gene_17241.t1	Hsc_gene_10895.t1	—	—	KAF7637478.1 Fmp27_GFWDK domain-containing protein [Meloidogyne graminicola]	No	-0.350

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.958\|GO:0005575_0.915\|GO:0110165_0.911\|GO:0009987_0.904\|GO:0065007_0.903\|GO:0050789_0.884\|GO:0050794_0.871\|GO:0003674_0.848\|GO:0016020_0.832\|GO:0005622_0.831\|GO:0005488_0.806\|GO:0043226_0.795\|GO:0043229_0.783\|GO:0048518_0.780\|GO:0048522_0.771\|GO:0016043_0.760\|GO:0071840_0.760\|GO:0043227_0.748\|GO:0051179_0.743\|GO:0043231_0.733\|GO:0051234_0.733\|GO:0006810_0.731\|GO:0071944_0.730\|GO:0005737_0.720\|GO:0032879_0.708\|GO:0006996_0.706\|GO:0005886_0.703\|GO:0051049_0.693\|GO:0061024_0.690\|GO:0016192_0.684\|GO:0046903_0.682\|GO:0016050_0.681\|GO:0032940_0.679\|GO:0051046_0.679\|GO:0140352_0.679\|GO:0060627_0.676\|GO:1903530_0.676\|GO:0051050_0.675\|GO:0061025_0.675\|GO:0006887_0.670\|GO:0006906_0.670\|GO:0017157_0.670\|GO:0045055_0.670\|GO:0045921_0.670\|GO:0048284_0.670\|GO:0051047_0.670\|GO:0090174_0.670\|GO:0099500_0.670\|GO:0140029_0.670\|GO:1903305_0.670\|GO:1903307_0.670\|GO:1903532_0.670\|GO:0008289_0.657\|GO:0005543_0.655\|GO:0035091_0.650\|GO:0005773_0.606\|GO:0012505_0.595\|GO:0031090_0.569\|GO:0005783_0.556\|GO:0031984_0.549\|GO:0005789_0.546\|GO:0042175_0.546\|GO:0098827_0.546\|GO:0044232_0.540\|GO:0140268_0.540	IPR045167+201-525+	—	—	—	PTHR15678+201-525+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	329-432;485-534	2.000	1-328;433-484	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.952	58508.070	9.536	26.000	20.787	11.236	50.000	50.000	13.483	7.303	57.116

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	216.475	342.778	323.369	249.296	220.143	225.219	241.338	359.563	67.379	160.904	120.822

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.314	-0.597	-0.267	-0.210	—	—	0.568	-0.434	—	—	—	—	—

No JSON data available for plots.

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