Hg_chrom7_TN10mRNA_13496
Organism: Heterodera glycines Gene Locus: chr7:2417499-2421855 Feature type: polypeptideProtein Sequence
Length: 408
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.826 | 0.855 | 1.07 | 0.676 | 0.613 | 0.943 | 0.554 | 1.348 | 1.144 | 1.822 | 0.408 | 1.586 | 1.77 | 0.707 | 1.601 | 1.225 | 0.804 | 0.966 | 1.885 | 0.721 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12731
|
— | — |
1.222
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cytoplasm
|
mitochondria
|
— |
9-35
|
0.978
|
— | — |
1-23
|
0.831
|
0.999
|
2.000
|
2.000
|
0.184
|
0.349
|
0.024
|
0.444
|
0.438
|
0.435
|
0.414
|
0.036
|
0.253
|
0.247
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000362
|
7.000
|
1.000
|
Hsc_gene_1937.t1
|
— | — | — |
KAF7637478.1 Fmp27_GFWDK domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.959|GO:0009987_0.904|GO:0005575_0.892|GO:0110165_0.892|GO:0016020_0.853|GO:0071944_0.836|GO:0065007_0.830|GO:0005886_0.827|GO:0050789_0.815|GO:0050794_0.801|GO:0005622_0.741|GO:0043226_0.716|GO:0005737_0.712|GO:0043229_0.710|GO:0043227_0.708|GO:0003674_0.702|GO:0043231_0.695|GO:0005773_0.686|GO:0012505_0.663|GO:0050896_0.602|GO:0005783_0.595|GO:0005488_0.585|GO:0051716_0.571|GO:0008152_0.561|GO:0007154_0.552|GO:0044238_0.550|GO:0023052_0.548|GO:0009058_0.542|GO:0044237_0.542|GO:0007165_0.535|GO:0043170_0.530|GO:0044249_0.523|GO:0006950_0.513|GO:0048519_0.512|GO:0009059_0.510|GO:0010646_0.508|GO:0019222_0.506|GO:0023051_0.506|GO:0048583_0.503|GO:0048523_0.502
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-408
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
46704.990
|
8.304
|
9.500
|
22.794
|
13.971
|
43.627
|
56.373
|
13.235
|
9.559
|
46.814
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
151.088
|
152.649
|
112.797
|
109.732
|
89.404
|
91.863
|
133.223
|
186.313
|
24.599
|
314.066
|
190.009
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.667
|
-0.613
|
— |
-0.329
|
— |
0.546
|
0.914
|
-0.341
|
-3.775
|
— | — | — | — |