Hg_chrom7_TN10mRNA_13499
Organism: Heterodera glycines Gene Locus: chr7:2433423-2434514 Feature type: polypeptideProtein Sequence
Length: 74
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.257 | 0.314 | 1.229 | 0.0 | 0.45 | 0.0 | 0.965 | 0.676 | 1.502 | 1.278 | 0.614 | 2.385 | 1.877 | 0.52 | 0.276 | 1.544 | 0.886 | 1.433 | 1.04 | 1.987 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12733
|
— | — |
1.778
|
2.000
|
2.000
|
4.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.541
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.087
|
0.188
|
0.325
|
0.178
|
0.261
|
0.277
|
0.604
|
0.001
|
0.085
|
0.288
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000362
|
7.000
|
1.000
|
Hsc_gene_1937.t1
|
Hsc_gene_1937.t1;Hsc_gene_6030.t1
|
— | — |
KAI3410030.1 Bax inhibitor 1 [Globodera pallida]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.916|GO:0008150_0.916|GO:0110165_0.907|GO:0009987_0.840|GO:0016020_0.808|GO:0065007_0.800|GO:0050896_0.790|GO:0050789_0.773|GO:0005622_0.761|GO:0005737_0.761|GO:0050794_0.757|GO:0051716_0.735|GO:0006950_0.732|GO:0043226_0.724|GO:0008152_0.714|GO:0023052_0.712|GO:0044237_0.710|GO:0071944_0.710|GO:0043229_0.709|GO:0007154_0.708|GO:0043227_0.706|GO:0009058_0.704|GO:0043231_0.704|GO:0044238_0.701|GO:0048519_0.700|GO:0007165_0.699|GO:0043170_0.698|GO:0044249_0.698|GO:0009059_0.693|GO:0019222_0.692|GO:0005886_0.690|GO:0010467_0.690|GO:0080090_0.690|GO:0048523_0.689|GO:0060255_0.688|GO:0031323_0.687|GO:0006139_0.682|GO:0010646_0.682|GO:0034654_0.682|GO:0009889_0.681|GO:0010556_0.681|GO:0023051_0.681|GO:0031326_0.681|GO:0033554_0.681|GO:0010468_0.680|GO:0048583_0.680|GO:0009892_0.677|GO:0009966_0.677|GO:0016070_0.677|GO:0090304_0.677|GO:0010605_0.676|GO:0032774_0.676|GO:0141187_0.676|GO:0008219_0.675|GO:0012501_0.675|GO:0031324_0.674|GO:0043067_0.674|GO:0043069_0.674|GO:0006915_0.673|GO:0009890_0.673|GO:0010558_0.673|GO:0031327_0.673|GO:0006396_0.670|GO:0006986_0.670|GO:0008380_0.670|GO:0009968_0.670|GO:0010629_0.670|GO:0010648_0.670|GO:0023057_0.670|GO:0033119_0.670|GO:0034620_0.670|GO:0035966_0.670|GO:0035967_0.670|GO:0042981_0.670|GO:0043066_0.670|GO:0043484_0.670|GO:0048585_0.670|GO:0097190_0.670|GO:2001233_0.670|GO:2001234_0.670|GO:0005773_0.618|GO:0012505_0.594|GO:0005783_0.572|GO:0003674_0.450|GO:0051179_0.417|GO:0006810_0.414|GO:0051234_0.414|GO:0005488_0.397|GO:0005515_0.388|GO:0042221_0.366|GO:0055085_0.360|GO:0042592_0.359|GO:0048878_0.359|GO:0019725_0.355|GO:0055082_0.353|GO:0098771_0.353|GO:0050801_0.352|GO:0055080_0.352|GO:0006873_0.351|GO:0009056_0.351|GO:0030003_0.351|GO:0031667_0.351
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-74
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
8033.260
|
4.399
|
-2.500
|
16.216
|
16.216
|
33.784
|
66.216
|
6.757
|
9.459
|
55.405
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
41.238
|
33.013
|
28.304
|
20.387
|
17.827
|
19.703
|
12.353
|
17.754
|
0.000
|
124.416
|
71.095
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.832
|
— | — | — | — | — | — |
-7.716
|
5.207
|
— | — | — |
No JSON data available for plots.