Hg_chrom7_TN10mRNA_13503
Organism: Heterodera glycines Gene Locus: chr7:2463862-2466527 Feature type: polypeptideProtein Sequence
Length: 300
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.085 | 1.152 | 0.46 | 1.722 | 1.966 | 0.437 | 2.0 | 0.741 | 1.171 | 0.657 | 1.373 | 0.741 | 0.577 | 1.837 | 0.619 | 1.148 | 1.313 | 0.513 | 0.196 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12737
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.386
|
0.201
|
0.036
|
0.619
|
0.155
|
0.136
|
0.147
|
0.021
|
0.280
|
0.319
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_4155.t1;Hsc_gene_4155.t2;Hsc_gene_4155.t3
|
— | — |
KAF7636205.1 Calponin-homology [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0045104
|
GO:0008150_0.934|GO:0005575_0.896|GO:0110165_0.895|GO:0009987_0.878|GO:0005622_0.840|GO:0003674_0.839|GO:0005488_0.814|GO:0005515_0.782|GO:0071840_0.769|GO:0016043_0.762|GO:0005737_0.759|GO:0043226_0.751|GO:0043229_0.748|GO:0008092_0.658|GO:0043228_0.652|GO:0043232_0.652|GO:0016020_0.649|GO:0050896_0.615|GO:0005856_0.595|GO:0032501_0.595|GO:0099080_0.587|GO:0032502_0.579|GO:0048856_0.577|GO:0071944_0.575|GO:0099081_0.573|GO:0099512_0.573|GO:0005886_0.553|GO:0030154_0.552|GO:0048869_0.552|GO:0044085_0.535|GO:0022607_0.526|GO:0009888_0.516|GO:0034330_0.510
|
IPR018159+37-136_38-251_139-249+|IPR043197+18-256+
|
SM00150+37-136_139-249+
|
— | — |
PTHR23169+18-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-41;300-300
|
1.000
|
42-299
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
34459.620
|
5.938
|
-4.000
|
34.000
|
8.000
|
57.667
|
42.333
|
17.333
|
16.667
|
46.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
17.438
|
25.569
|
16.839
|
29.222
|
37.190
|
27.053
|
39.376
|
17.140
|
3.710
|
1.365
|
2.370
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.837
|
— |
0.907
|
— | — |
0.554
|
-0.757
|
1.343
|
— | — | — | — | — |
No JSON data available for plots.