SCN Proteipedia

Hg_chrom7_TN10mRNA_13504

Organism: Heterodera glycines Gene Locus: chr7:2468918-2471521 Feature type: polypeptide

Protein Sequence

Length: 328

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.028	0.851	1.109	0.841	0.508	1.173	0.907	2.287	1.084	1.03	0.785	1.614	1.27	0.704	1.182	1.742	0.7	0.831	0.704	0.538	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12738	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	golgi_apparatus	—	KRRR	—	—	16-48	0.978	—	—	0.000	—	—	0.158	0.511	0.035	0.411	0.309	0.415	0.527	0.153	0.183	0.069

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000434	6.000	2.000	Hsc_gene_10895.t1;Hsc_gene_17241.t1	Hsc_gene_10895.t1;Hsc_gene_1937.t1	—	—	KAF7637478.1 Fmp27_GFWDK domain-containing protein [Meloidogyne graminicola]	No	-0.210

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.946\|GO:0005575_0.933\|GO:0110165_0.930\|GO:0009987_0.893\|GO:0016020_0.882\|GO:0005622_0.863\|GO:0065007_0.849\|GO:0050789_0.838\|GO:0043226_0.832\|GO:0003674_0.830\|GO:0043229_0.821\|GO:0050794_0.821\|GO:0043227_0.784\|GO:0043231_0.784\|GO:0005488_0.780\|GO:0071840_0.767\|GO:0005737_0.766\|GO:0016043_0.757\|GO:0048518_0.750\|GO:0051179_0.748\|GO:0048522_0.743\|GO:0051234_0.736\|GO:0006810_0.734\|GO:0071944_0.725\|GO:0006996_0.703\|GO:0005886_0.702\|GO:0032879_0.694\|GO:0061024_0.691\|GO:0051049_0.685\|GO:0016192_0.683\|GO:0016050_0.678\|GO:0046903_0.678\|GO:0140352_0.677\|GO:0032940_0.676\|GO:0061025_0.676\|GO:0051046_0.675\|GO:0060627_0.674\|GO:1903530_0.673\|GO:0006887_0.670\|GO:0006906_0.670\|GO:0017157_0.670\|GO:0045055_0.670\|GO:0045921_0.670\|GO:0048284_0.670\|GO:0051047_0.670\|GO:0051050_0.670\|GO:0090174_0.670\|GO:0099500_0.670\|GO:0140029_0.670\|GO:1903305_0.670\|GO:1903307_0.670\|GO:1903532_0.670\|GO:0008289_0.657\|GO:0005543_0.654\|GO:0035091_0.650\|GO:0005773_0.618\|GO:0012505_0.603\|GO:0031090_0.580\|GO:0005783_0.562\|GO:0031984_0.549\|GO:0005789_0.546\|GO:0042175_0.546\|GO:0098827_0.546\|GO:0044232_0.540\|GO:0140268_0.540	IPR045167+72-291+	—	—	—	PTHR15678+72-291+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	147-244	2.000	1-146;245-328	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.904	35832.480	8.679	13.500	24.695	11.890	49.390	50.610	15.549	9.146	54.268

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	144.925	147.148	119.658	117.687	120.763	100.110	142.726	178.700	4.619	283.034	163.714

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.529	-0.460	—	—	—	0.522	0.729	—	-6.138	5.049	—	—	—

No JSON data available for plots.

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