Hg_chrom7_TN10mRNA_13508
Organism: Heterodera glycines Gene Locus: chr7:2485521-2494791 Feature type: polypeptideProtein Sequence
Length: 686
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.153 | 0.814 | 1.272 | 0.503 | 1.361 | 2.504 | 0.469 | 1.385 | 0.842 | 1.714 | 0.817 | 1.801 | 0.891 | 0.533 | 1.249 | 0.646 | 0.717 | 0.618 | 1.233 | 0.557 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12742
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KKENHDKIEKCSKRLLRKK
|
— | — | — | — |
1-16
|
0.995
|
1.000
|
0.000
|
0.000
|
0.180
|
0.281
|
0.024
|
0.799
|
0.146
|
0.206
|
0.426
|
0.015
|
0.279
|
0.247
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000582
|
5.000
|
2.000
|
Hsc_gene_9097.t1;Hsc_gene_9097.t2
|
— | — | — |
KAI1722356.1 spectrin repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0008150_0.964|GO:0005575_0.921|GO:0009987_0.916|GO:0110165_0.913|GO:0003674_0.746|GO:0005622_0.737|GO:0005488_0.715|GO:0005515_0.706|GO:0065007_0.682|GO:0050789_0.675|GO:0043226_0.672|GO:0043229_0.662|GO:0016020_0.653|GO:0050794_0.646|GO:0032501_0.601|GO:0032502_0.587|GO:0048856_0.587|GO:0050896_0.581|GO:0051179_0.574|GO:0051234_0.564|GO:0016043_0.557|GO:0071840_0.557|GO:0007275_0.555|GO:0005737_0.545|GO:0043228_0.542|GO:0043232_0.542|GO:0051641_0.539|GO:0071944_0.526|GO:0005856_0.520|GO:0005886_0.517
|
IPR018159+45-162_171-278_487-575+|IPR037219+305-469+
|
SM00150+45-162_171-278_487-575+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
681-686
|
1.000
|
1-680
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
78712.210
|
5.170
|
-15.500
|
29.446
|
9.475
|
51.603
|
48.397
|
14.286
|
15.160
|
41.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
512.369
|
76.668
|
108.336
|
55.385
|
57.249
|
506.350
|
500.063
|
3776.573
|
117.808
|
248.026
|
192.218
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.270
|
-0.607
|
-0.859
|
— |
3.157
|
— |
2.800
|
-2.776
|
— | — | — | — | — |