Hg_chrom7_TN10mRNA_13512
Organism: Heterodera glycines Gene Locus: chr7:2515843-2525988 Feature type: polypeptideProtein Sequence
Length: 696
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.852 | 1.236 | 0.731 | 0.595 | 0.982 | 1.547 | 0.804 | 1.437 | 0.894 | 1.048 | 0.849 | 0.845 | 1.277 | 1.05 | 1.378 | 1.375 | 0.919 | 0.871 | 0.442 | 0.845 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12746
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.764
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
RRKRRR,KRAQKTRQQQKRRRSQ
|
— | — |
10-47
|
0.992
|
— | — |
0.000
|
— | — |
0.109
|
0.178
|
0.025
|
0.376
|
0.401
|
0.205
|
0.289
|
0.213
|
0.643
|
0.206
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000435
|
4.000
|
4.000
|
Hsc_gene_26670.t1;Hsc_gene_26670.t2;Hsc_gene_26670.t3;Hsc_gene_26670.t4
|
Hsc_gene_26670.t1;Hsc_gene_26670.t2;Hsc_gene_26670.t3;Hsc_gene_26670.t4
|
— | — |
KAI1733283.1 doublecortin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0035556
|
GO:0008150_0.875|GO:0005575_0.867|GO:0110165_0.861|GO:0009987_0.782|GO:0016020_0.700|GO:0032501_0.689|GO:0071944_0.655|GO:0005622_0.626|GO:0043226_0.622|GO:0005886_0.614|GO:0065007_0.558|GO:0050789_0.543|GO:0043229_0.516
|
IPR003533+152-240_157-240_176-230_334-411_339-402+|IPR036572+149-248_154-235_334-412_336-398+|IPR040163+156-268+
|
SM00537+152-240_334-411+
|
PF03607+176-230+Doublecortin
|
— |
PTHR23005+156-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
52-102;192-329
|
3.000
|
1-51;103-191;330-696
|
4atu_I
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
77506.210
|
9.441
|
27.000
|
25.144
|
10.920
|
51.724
|
48.276
|
15.230
|
9.914
|
51.580
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
578.856
|
63.356
|
325.918
|
183.050
|
44.871
|
20.237
|
101.219
|
94.077
|
2401.358
|
419.206
|
1268.699
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.135
|
1.394
|
-0.725
|
-2.063
|
-1.134
|
2.334
|
2.117
|
— |
2.406
|
-3.534
|
-2.999
|
— | — |
No JSON data available for plots.