Hg_chrom7_TN10mRNA_13516
Organism: Heterodera glycines Gene Locus: chr7:2537486-2539905 Feature type: polypeptideProtein Sequence
Length: 654
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.747 | 0.889 | 1.251 | 0.738 | 1.07 | 0.784 | 0.328 | 1.606 | 1.597 | 1.508 | 1.506 | 0.989 | 1.402 | 0.912 | 0.936 | 1.114 | 0.852 | 0.741 | 1.176 | 0.45 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12750
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,RKLNDDESTKSLLERIKKF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.837
|
0.170
|
0.029
|
0.304
|
0.184
|
0.137
|
0.116
|
0.014
|
0.058
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000368
|
7.000
|
1.000
|
Hsc_gene_24056.t2
|
— | — |
O75132.2 Zinc finger BED domain-containing protein 4 [Homo sapiens]
|
KAH7708893.1 zinc finger BED domain-containing protein 4-like [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0046983
|
GO:0005575_0.910|GO:0110165_0.905|GO:0005622_0.874|GO:0005737_0.751|GO:0043226_0.743|GO:0043229_0.733|GO:0016020_0.719|GO:0003674_0.705|GO:0043227_0.654|GO:0005488_0.639|GO:0043231_0.637|GO:0008150_0.591|GO:0005634_0.527|GO:0005515_0.520
|
IPR003656+1-50+|IPR008906+565-646+|IPR012337+179-648+|IPR036236+2-51+|IPR052035+2-653+
|
— |
PF05699+565-646+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+2-653+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-654
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
74822.540
|
8.473
|
18.500
|
31.040
|
11.315
|
50.917
|
49.083
|
17.737
|
13.303
|
44.648
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
7.555
|
2.965
|
8.300
|
9.246
|
10.892
|
14.757
|
5.687
|
7.924
|
8.293
|
4.418
|
6.079
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.246
|
1.500
|
— | — | — |
-1.370
|
— | — | — | — | — | — | — |
No JSON data available for plots.