Hg_chrom7_TN10mRNA_13524
Organism: Heterodera glycines Gene Locus: chr7:2678576-2686416 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.453 | 0.494 | 1.499 | 1.087 | 0.488 | 0.453 | 1.63 | 1.389 | 0.698 | 1.235 | 2.558 | 1.736 | 1.254 | 1.109 | 1.165 | 0.802 | 0.618 | 1.672 | 0.719 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12758
|
— | — |
0.889
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
KKTTKRQMPSSYRRKMKWLSSLKPKRPWKSSRNSHIVSWKKKPF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.277
|
0.673
|
0.083
|
0.390
|
0.363
|
0.065
|
0.102
|
0.036
|
0.177
|
0.332
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002395
|
2.000
|
2.000
|
Hsc_gene_26660.t1;Hsc_gene_26666.t1
|
Hsc_gene_26660.t1
|
— | — | — |
WP_259430203
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0008150_0.945|GO:0009987_0.886|GO:0005575_0.876|GO:0110165_0.875|GO:0065007_0.855|GO:0005622_0.804|GO:0016020_0.792|GO:0043226_0.772|GO:0043229_0.761|GO:0043227_0.735|GO:0071840_0.735|GO:0043231_0.726|GO:0016043_0.725|GO:0051179_0.716|GO:0005737_0.707|GO:0006810_0.705|GO:0051234_0.705|GO:0006996_0.691|GO:0007005_0.670|GO:0050789_0.619|GO:0050794_0.600|GO:0005739_0.555
|
IPR000642+37-127+|IPR037219+31-172_34-132+
|
— |
PF01434+37-127+Peptidase_family_M41
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-368
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
42216.870
|
9.195
|
22.000
|
26.087
|
14.130
|
47.283
|
52.717
|
16.848
|
9.239
|
48.098
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.