Hg_chrom7_TN10mRNA_13527
Organism: Heterodera glycines Gene Locus: chr7:2726216-2733353 Feature type: polypeptideProtein Sequence
Length: 398
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 1.461 | 1.005 | 0.52 | 1.466 | 1.804 | 1.137 | 1.633 | 0.614 | 0.543 | 1.218 | 1.182 | 1.186 | 0.773 | 1.026 | 0.861 | 1.071 | 0.571 | 1.353 | 0.665 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12761
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKKLKKT,KRRARGKSGKGGRRRAL
|
— | — | — | — | — | — |
0.003
|
— | — |
0.927
|
0.063
|
0.014
|
0.220
|
0.017
|
0.016
|
0.043
|
0.005
|
0.041
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004525
|
1.000
|
2.000
|
Hsc_gene_4146.t1;Hsc_gene_4146.t2
|
— | — |
Q61080.2 Forkhead box protein F1 [Mus musculus]
|
KAI3410024.1 Forkhead box protein F1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0006355|GO:0043565
|
GO:0008150_0.940|GO:0009987_0.740|GO:0003674_0.710|GO:0032502_0.701|GO:0048856_0.701|GO:0065007_0.698|GO:0050789_0.688|GO:0032501_0.674|GO:0005488_0.672|GO:0050794_0.671|GO:0005575_0.659|GO:0110165_0.659|GO:0007275_0.645|GO:0005622_0.610|GO:0097159_0.576|GO:0003676_0.564|GO:0043226_0.559|GO:0048731_0.557|GO:0043229_0.539|GO:0008152_0.521|GO:0016020_0.515|GO:0043170_0.512|GO:0009058_0.511|GO:0044238_0.509
|
IPR001766+240-330_241-319_242-255_242-318_263-280_286-303+|IPR030456+286-292+|IPR036388+230-334+|IPR036390+241-326+|IPR051770+188-318+
|
SM00339+240-330+
|
PF00250+241-319+Forkhead_domain
|
— |
PTHR46262+188-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-43;148-256;315-398
|
2.000
|
44-147;257-314
|
1d5v_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.735
|
44574.970
|
6.689
|
1.500
|
30.653
|
11.558
|
56.533
|
43.467
|
16.332
|
14.322
|
50.754
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.