Hg_chrom7_TN10mRNA_13528
Organism: Heterodera glycines Gene Locus: chr7:2737840-2774010 Feature type: polypeptideProtein Sequence
Length: 3,544
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 0.761 | 1.216 | 0.165 | 1.321 | 1.584 | 0.752 | 1.524 | 0.959 | 1.331 | 0.56 | 1.062 | 0.713 | 0.771 | 1.837 | 1.0 | 0.962 | 1.035 | 0.673 | 0.556 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12756a
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
PLAKRLK,KKPYSKKR,RKATDEAERMRRLRD,RRLRAEDEERRRLRA,RRKALEEADRLRRERE,RRKQWDADEAARLKRW,RKNIVNVLIQNWRRKQQ,KKVLDRHGHLEHRGRRL,KKTFTKWVNQHLIKTDRK,RRLRDAEEEAERLRRLRA,RRRLRALDEAERRRRREQ,RKQQEEEERRRAEEEAKRR,RRRAEEEAKRRAFEAARRK,RRAEEEAKRRAFEAARRKA,RRRRREQQEAEEAARRKQW
|
— | — |
8-51
|
0.944
|
— | — |
0.000
|
— | — |
0.272
|
0.239
|
0.053
|
0.562
|
0.101
|
0.181
|
0.166
|
0.015
|
0.637
|
0.246
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000321
|
5.000
|
4.000
|
Hsc_gene_4155.t1;Hsc_gene_4155.t2;Hsc_gene_4155.t3;Hsc_gene_4155.t4
|
Hsc_gene_4153.t1;Hsc_gene_4155.t1;Hsc_gene_4155.t2;Hsc_gene_4155.t3;Hsc_gene_4155.t4;Hsc_gene_6031.t1
|
— |
Q91ZU6.2 Dystonin [Mus musculus]
|
KAF7636205.1 Calponin-homology [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005856|GO:0045104
|
GO:0005575_0.922|GO:0110165_0.913|GO:0008150_0.891|GO:0009987_0.863|GO:0005622_0.794|GO:0016020_0.769|GO:0003674_0.762|GO:0043226_0.725|GO:0043229_0.703|GO:0005488_0.699|GO:0016043_0.699|GO:0071840_0.699|GO:0071944_0.672|GO:0005886_0.660|GO:0043228_0.659|GO:0043232_0.659|GO:0005737_0.654|GO:0005515_0.651|GO:0005856_0.590|GO:0065007_0.562|GO:0050789_0.547|GO:0032502_0.536|GO:0048856_0.536|GO:0032501_0.525
|
IPR001101+1553-1586_1614-1648_1792-1837_1844-1876_1956-1996_2020-2055_2096-2139_2222-2265_2274-2316_2352-2389_2400-2443_2545-2580_2788-2829_2848-2888_2905-2969_2946-2972_2984-3028_3035-3080_3098-3135_3299-3339+|IPR001452+850-908+|IPR001589+165-174_238-262+|IPR001715+163-266_165-264_165-266_326-432_328-427_328-430+|IPR002017+570-663+|IPR018159+567-664_570-771_667-768_1021-1120_1022-1235_1123-1233_1240-1375+|IPR035915+1535-1664_1548-1706_1687-1908_1736-1903_1856-2003_2003-2166_2008-2162_2203-2308_2215-2479_2359-2445_2482-2586_2699-2890_2738-2895_2903-3034_2905-3034_3035-3079_3035-3190_3102-3188_3309-3403_3313-3364+|IPR036872+144-272_146-427_325-436+|IPR041615+841-906+|IPR043197+437-1396+
|
SM00033+165-264_328-427+|SM00150+567-664_667-768_1021-1120_1123-1233_1240-1375+|SM00250+1553-1586_1614-1648_1792-1837_1844-1876_1956-1996_2020-2055_2096-2139_2222-2265_2274-2316_2352-2389_2400-2443_2545-2580_2788-2829_2848-2888_2905-2969_2984-3028_3035-3080_3098-3135_3299-3339+
|
PF00307+165-266_328-430+Calponin_homology_(CH)_domain|PF00435+570-663+Spectrin_repeat|PF00681+2946-2972+Plectin_repeat|PF17902+841-906+SH3_domain
|
G3DSA:1.10.418.10:FF:000048+148-269+Short_stop,_isoform_B
|
PTHR23169+437-1396+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-157;1389-1557;2071-2216;2430-2502;2571-2703;3225-3276;3349-3544
|
6.000
|
158-1388;1558-2070;2217-2429;2503-2570;2704-3224;3277-3348
|
4q57_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
397648.110
|
6.311
|
-14.000
|
30.361
|
8.380
|
52.681
|
47.319
|
15.745
|
14.616
|
48.843
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
turquoise
|
8746.009
|
19812.023
|
16272.011
|
5698.724
|
4238.014
|
13803.932
|
2927.899
|
9273.331
|
3569.792
|
8576.719
|
6430.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.511
|
-1.935
|
-1.407
|
-0.459
|
1.718
|
-2.229
|
-0.674
|
-1.524
|
— | — | — | — | — |
No JSON data available for plots.