Hg_chrom7_TN10mRNA_13529
Organism: Heterodera glycines Gene Locus: chr7:2748791-2774010 Feature type: polypeptideProtein Sequence
Length: 3,465
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.017 | 0.685 | 1.207 | 0.139 | 1.352 | 1.547 | 0.883 | 1.472 | 0.917 | 1.295 | 0.547 | 1.07 | 0.697 | 0.749 | 1.902 | 0.957 | 0.899 | 1.014 | 0.644 | 0.645 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12756a
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
PLAKRLK,KKPYSKKR,RKATDEAERMRRLRD,RRLRAEDEERRRLRA,RRKALEEADRLRRERE,RRKQWDADEAARLKRW,RKNIVNVLIQNWRRKQQ,KKVLDRHGHLEHRGRRL,RRLRDAEEEAERLRRLRA,RRRLRALDEAERRRRREQ,RKQQEEEERRRAEEEAKRR,RRRAEEEAKRRAFEAARRK,RRAEEEAKRRAFEAARRKA,RRRRREQQEAEEAARRKQW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.305
|
0.238
|
0.054
|
0.536
|
0.095
|
0.164
|
0.143
|
0.010
|
0.653
|
0.269
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000321
|
5.000
|
4.000
|
Hsc_gene_4155.t1;Hsc_gene_4155.t2;Hsc_gene_4155.t3;Hsc_gene_4155.t4
|
Hsc_gene_4155.t1;Hsc_gene_4155.t2;Hsc_gene_4155.t3;Hsc_gene_4155.t4;Hsc_gene_6031.t1
|
— |
E9Q557.1 Desmoplakin [Mus musculus]
|
KAF7636205.1 Calponin-homology [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005856|GO:0045104
|
GO:0005575_0.892|GO:0110165_0.881|GO:0008150_0.869|GO:0009987_0.801|GO:0005622_0.748|GO:0003674_0.697|GO:0016020_0.684|GO:0043226_0.649|GO:0005488_0.638|GO:0043229_0.631|GO:0005737_0.621|GO:0043228_0.616|GO:0043232_0.616|GO:0016043_0.606|GO:0071840_0.606|GO:0071944_0.599|GO:0005886_0.594|GO:0005515_0.584|GO:0032502_0.552|GO:0048856_0.552|GO:0005856_0.515
|
IPR001101+1474-1507_1535-1569_1713-1758_1765-1797_1877-1917_1941-1976_2017-2060_2143-2186_2195-2237_2273-2310_2321-2364_2466-2501_2709-2750_2769-2809_2826-2890_2867-2893_2905-2949_2956-3001_3019-3056_3220-3260+|IPR001452+771-829+|IPR001715+247-353_249-348_249-351+|IPR002017+491-584+|IPR018159+488-585_491-692_588-689_942-1041_943-1156_1044-1154_1161-1296+|IPR035915+1456-1585_1469-1627_1655-1828_1657-1824_1777-1925_1924-2091_1929-2083_2124-2229_2136-2241_2277-2366_2311-2526_2403-2507_2620-2811_2656-2816_2823-2956_2826-2954_2937-2999_2957-3127_3023-3109_3224-3325_3234-3285+|IPR036872+246-352_246-357+|IPR041615+762-827+|IPR043197+358-1317+
|
SM00033+249-348+|SM00150+488-585_588-689_942-1041_1044-1154_1161-1296+|SM00250+1474-1507_1535-1569_1713-1758_1765-1797_1877-1917_1941-1976_2017-2060_2143-2186_2195-2237_2273-2310_2321-2364_2466-2501_2709-2750_2769-2809_2826-2890_2905-2949_2956-3001_3019-3056_3220-3260+
|
PF00307+249-351+Calponin_homology_(CH)_domain|PF00435+491-584+Spectrin_repeat|PF00681+2867-2893+Plectin_repeat|PF17902+762-827+SH3_domain
|
— |
PTHR23169+358-1317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-196;1310-1478;1992-2137;2351-2423;2492-2624;3146-3197;3270-3465
|
6.000
|
197-1309;1479-1991;2138-2350;2424-2491;2625-3145;3198-3269
|
8iai_T
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
387433.030
|
6.333
|
-12.000
|
30.620
|
8.485
|
51.775
|
48.225
|
15.873
|
14.747
|
48.918
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
turquoise
|
8746.009
|
19812.023
|
16272.011
|
5698.724
|
4238.014
|
13803.932
|
2927.899
|
9273.331
|
3569.792
|
8576.719
|
6430.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.511
|
-1.935
|
-1.407
|
-0.459
|
1.718
|
-2.229
|
-0.674
|
-1.524
|
— | — | — | — | — |
No JSON data available for plots.