Hg_chrom7_TN10mRNA_13530
Organism: Heterodera glycines Gene Locus: chr7:2748791-2774010 Feature type: polypeptideProtein Sequence
Length: 3,328
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.999 | 0.657 | 1.213 | 0.124 | 1.362 | 1.579 | 0.894 | 1.472 | 0.928 | 1.283 | 0.551 | 1.114 | 0.676 | 0.745 | 1.938 | 0.949 | 0.887 | 1.02 | 0.601 | 0.645 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12756a
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
PLAKRLK,KKPYSKKR,RKATDEAERMRRLRD,RRLRAEDEERRRLRA,RRKALEEADRLRRERE,RRKQWDADEAARLKRW,RKNIVNVLIQNWRRKQQ,KKVLDRHGHLEHRGRRL,RRLRDAEEEAERLRRLRA,RRRLRALDEAERRRRREQ,RKQQEEEERRRAEEEAKRR,RRRAEEEAKRRAFEAARRK,RRAEEEAKRRAFEAARRKA,RRRRREQQEAEEAARRKQW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.316
|
0.223
|
0.051
|
0.539
|
0.098
|
0.153
|
0.141
|
0.007
|
0.630
|
0.284
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000321
|
5.000
|
4.000
|
Hsc_gene_4155.t1;Hsc_gene_4155.t2;Hsc_gene_4155.t3;Hsc_gene_4155.t4
|
Hsc_gene_4155.t1;Hsc_gene_4155.t2;Hsc_gene_4155.t4;Hsc_gene_6031.t1
|
— |
E9Q557.1 Desmoplakin [Mus musculus]
|
KAF7636205.1 Calponin-homology [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005856|GO:0045104
|
GO:0005575_0.896|GO:0110165_0.889|GO:0008150_0.866|GO:0009987_0.791|GO:0005622_0.739|GO:0016020_0.682|GO:0003674_0.658|GO:0043226_0.627|GO:0005737_0.617|GO:0043229_0.606|GO:0043228_0.603|GO:0043232_0.603|GO:0005488_0.601|GO:0016043_0.593|GO:0071840_0.593|GO:0071944_0.581|GO:0005886_0.570|GO:0005515_0.561|GO:0032502_0.534|GO:0048856_0.534|GO:0005856_0.520
|
IPR001101+1337-1370_1398-1432_1576-1621_1628-1660_1740-1780_1804-1839_1880-1923_2006-2049_2058-2100_2136-2173_2184-2227_2329-2364_2572-2613_2632-2672_2689-2753_2730-2756_2768-2812_2819-2864_2882-2919_3083-3123+|IPR001452+634-692+|IPR002017+354-447+|IPR018159+351-448_354-555_451-552_805-904_806-1019_907-1017_1024-1159+|IPR035915+1319-1448_1332-1490_1517-1693_1520-1690_1789-1949_1792-1946_1987-2092_2004-2262_2140-2229_2266-2370_2508-2674_2521-2679_2687-2818_2689-2817_2819-2863_2819-2974_2886-2972_3089-3183_3097-3148+|IPR041615+625-690+|IPR043197+221-1181+
|
SM00150+351-448_451-552_805-904_907-1017_1024-1159+|SM00250+1337-1370_1398-1432_1576-1621_1628-1660_1740-1780_1804-1839_1880-1923_2006-2049_2058-2100_2136-2173_2184-2227_2329-2364_2572-2613_2632-2672_2689-2753_2768-2812_2819-2864_2882-2919_3083-3123+
|
PF00435+354-447+Spectrin_repeat|PF00681+2730-2756+Plectin_repeat|PF17902+625-690+SH3_domain
|
— |
PTHR23169+221-1181+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-200;1173-1341;1855-2000;2214-2286;2355-2487;3009-3060;3133-3328
|
6.000
|
201-1172;1342-1854;2001-2213;2287-2354;2488-3008;3061-3132
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
372417.290
|
6.391
|
-8.000
|
30.919
|
8.353
|
51.953
|
48.047
|
16.076
|
14.844
|
48.618
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
turquoise
|
8746.009
|
19812.023
|
16272.011
|
5698.724
|
4238.014
|
13803.932
|
2927.899
|
9273.331
|
3569.792
|
8576.719
|
6430.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.511
|
-1.935
|
-1.407
|
-0.459
|
1.718
|
-2.229
|
-0.674
|
-1.524
|
— | — | — | — | — |
No JSON data available for plots.