Hg_chrom7_TN10mRNA_13531
Organism: Heterodera glycines Gene Locus: chr7:2774629-2784957 Feature type: polypeptideProtein Sequence
Length: 989
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.364 | 0.611 | 1.121 | 0.418 | 1.719 | 2.022 | 0.602 | 1.567 | 0.629 | 1.544 | 0.628 | 1.249 | 0.534 | 0.486 | 2.105 | 0.924 | 0.58 | 0.674 | 1.322 | 0.119 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12762
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.412
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRS,KKDELDRALMEIESRIERR,RRTADEFDALARDLQRKVR
|
— | — |
24-64
|
0.803
|
— | — |
0.000
|
— | — |
0.309
|
0.265
|
0.020
|
0.644
|
0.089
|
0.102
|
0.155
|
0.008
|
0.396
|
0.382
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004195
|
2.000
|
1.000
|
Hsc_gene_4156.t1
|
Hsc_gene_4156.t1;Hsc_gene_4157.t1
|
— | — |
KHN76670.1 Dystonin [Toxocara canis]
|
No
|
-0.560
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002017+852-953+|IPR018159+57-161_292-394_404-502_849-952+
|
SM00150+57-161_292-394_404-502_849-952+
|
PF00435+852-953+Spectrin_repeat
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-130;324-403;545-661;778-829
|
4.000
|
131-323;404-544;662-777;830-989
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
112168.770
|
6.287
|
-4.500
|
34.075
|
7.179
|
54.601
|
45.399
|
17.594
|
16.481
|
43.782
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1688.358
|
3108.352
|
3077.923
|
1422.785
|
1011.878
|
2407.299
|
622.992
|
1851.519
|
1277.630
|
1364.814
|
1327.449
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.243
|
-1.265
|
-1.005
|
-0.523
|
1.265
|
-1.943
|
-0.482
|
-1.433
|
— | — | — | — | — |
No JSON data available for plots.