Hg_chrom7_TN10mRNA_13535
Organism: Heterodera glycines Gene Locus: chr7:2801710-2804054 Feature type: polypeptideProtein Sequence
Length: 149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.171 | 1.873 | 0.488 | 0.694 | 1.007 | 0.344 | 0.559 | 1.342 | 1.641 | 0.907 | 0.712 | 3.158 | 1.119 | 0.645 | 0.959 | 1.055 | 1.54 | 0.712 | 1.549 | 0.79 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12766
|
— | — |
0.889
|
1.000
|
— |
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion|plastid
|
— | — | — | — |
6-32
|
0.989
|
— | — |
0.000
|
— | — |
0.274
|
0.741
|
0.767
|
0.406
|
0.264
|
0.027
|
0.056
|
0.101
|
0.173
|
0.356
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001297
|
2.000
|
3.000
|
Hsc_gene_16416.t1;Hsc_gene_1983.t1;Hsc_gene_26663.t1
|
Hsc_gene_26663.t1
|
— | — | — |
MBR1933145
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0008150_0.919|GO:0005575_0.884|GO:0110165_0.872|GO:0009987_0.849|GO:0016020_0.790|GO:0005622_0.782|GO:0065007_0.770|GO:0005737_0.767|GO:0043226_0.740|GO:0043229_0.731|GO:0051179_0.725|GO:0006810_0.720|GO:0051234_0.720|GO:0071840_0.717|GO:0016043_0.710|GO:0043227_0.703|GO:0043231_0.694|GO:0006996_0.686|GO:0007005_0.675|GO:0005739_0.568|GO:0050789_0.536|GO:0050794_0.522
|
IPR000642+60-146+|IPR037219+54-149_57-148+
|
— |
PF01434+60-146+Peptidase_family_M41
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-149
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
16653.110
|
7.801
|
3.000
|
20.805
|
11.409
|
46.980
|
53.020
|
12.081
|
8.725
|
52.349
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
97.696
|
19.355
|
27.576
|
11.536
|
7.134
|
14.504
|
10.227
|
32.938
|
97.942
|
307.736
|
217.825
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.883
|
-1.147
|
— |
1.037
|
— |
1.083
|
-1.555
|
— | — |
-5.109
|
— | — |
No JSON data available for plots.