Hg_chrom7_TN10mRNA_13540
Organism: Heterodera glycines Gene Locus: chr7:2821580-2827801 Feature type: polypeptideProtein Sequence
Length: 566
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.801 | 1.685 | 0.835 | 0.67 | 0.854 | 1.45 | 0.484 | 1.502 | 0.667 | 1.146 | 0.482 | 1.767 | 0.932 | 1.189 | 1.514 | 1.287 | 1.13 | 1.017 | 0.408 | 1.091 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12770
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.504
|
0.320
|
0.006
|
0.626
|
0.118
|
0.113
|
0.146
|
0.020
|
0.094
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002396
|
2.000
|
2.000
|
Hsc_gene_1935.t1;Hsc_gene_1935.t2
|
Hsc_gene_1935.t2;Hsc_gene_1938.t1
|
— |
Q5XIV0.1 Terminal nucleotidyltransferase 5C [Rattus norvegicus]
|
KAH7728579.1 prion-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0003674_0.873|GO:0008150_0.743|GO:0005575_0.724|GO:0110165_0.721|GO:0003824_0.706|GO:0009987_0.700|GO:0016740_0.689|GO:0065007_0.688|GO:0050789_0.680|GO:0050794_0.669|GO:0016772_0.664|GO:0005622_0.654|GO:0016779_0.650|GO:0070566_0.650|GO:1990817_0.650|GO:0048518_0.584|GO:0048522_0.574|GO:0005737_0.541
|
IPR012937+46-417_64-373+
|
SM01153+64-373+
|
PF07984+64-373+Nucleotidyltransferase
|
— |
PTHR12974+46-417+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-83;398-566
|
1.000
|
84-397
|
6w3i_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
63867.840
|
8.269
|
13.500
|
23.322
|
10.601
|
52.120
|
47.880
|
13.604
|
9.717
|
53.534
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
tan
|
1347.614
|
1918.699
|
1477.084
|
932.296
|
898.005
|
2859.577
|
1219.132
|
2974.257
|
1254.787
|
350.079
|
737.811
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.606
|
-1.179
|
-0.556
|
— |
1.685
|
-1.222
|
— |
-1.147
|
— | — | — | — | — |
No JSON data available for plots.