Hg_chrom7_TN10mRNA_13541
Organism: Heterodera glycines Gene Locus: chr7:2864130-2871420 Feature type: polypeptideProtein Sequence
Length: 647
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.042 | 1.15 | 1.152 | 1.013 | 0.876 | 1.308 | 0.662 | 1.623 | 0.927 | 1.17 | 0.656 | 2.091 | 1.288 | 0.684 | 1.451 | 1.192 | 0.912 | 0.726 | 1.308 | 0.364 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12771
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RHNKKRARKEEKPPSAKKQKNK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.163
|
0.312
|
0.032
|
0.172
|
0.122
|
0.072
|
0.154
|
0.125
|
0.239
|
0.846
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004526
|
1.000
|
2.000
|
Hsc_gene_1933.t1;Hsc_gene_1933.t2
|
— | — |
P59511.2 A disintegrin and metalloproteinase with thrombospondin motifs 20 [Mus musculus]
|
KAI1722872.1 reprolysin (M12B) family zinc metalloprotease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237
|
GO:0008150_0.937|GO:0005575_0.740|GO:0110165_0.732|GO:0009987_0.727|GO:0003674_0.703|GO:0032501_0.629|GO:0032502_0.628|GO:0048856_0.611|GO:0065007_0.574|GO:0003824_0.550|GO:0050789_0.538|GO:0140096_0.528|GO:0016787_0.522|GO:0008233_0.501
|
IPR001590+251-407_272-411+|IPR024079+222-412+|IPR041645+495-571+|IPR050439+268-584+
|
— |
PF01421+251-407+Reprolysin_(M12B)_family_zinc_metalloprotease|PF17771+495-571+ADAMTS_cysteine-rich_domain_2
|
— |
PTHR13723+268-584+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
444-489;644-647
|
2.000
|
1-443;490-643
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
72623.260
|
7.343
|
9.500
|
26.275
|
10.819
|
50.232
|
49.768
|
14.683
|
11.592
|
51.005
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
blue
|
690.067
|
197.972
|
633.476
|
190.530
|
135.488
|
241.547
|
47.681
|
668.936
|
120.330
|
2135.433
|
1271.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.448
|
-0.192
|
-1.625
|
-0.525
|
0.850
|
-2.332
|
1.367
|
-3.670
|
-4.264
|
— |
-3.628
|
— | — |
No JSON data available for plots.