Hg_chrom7_TN10mRNA_13542
Organism: Heterodera glycines Gene Locus: chr7:2871607-2876022 Feature type: polypeptideProtein Sequence
Length: 433
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.537 | 1.772 | 0.924 | 0.557 | 1.771 | 0.711 | 0.577 | 0.462 | 1.642 | 1.28 | 1.33 | 2.174 | 1.925 | 0.533 | 0.707 | 0.792 | 0.947 | 0.665 | 1.244 | 0.611 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12772
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
nucleus
|
KRMTAKGIIDYLEGKCKPK
|
— | — | — | — |
1-23
|
0.907
|
1.000
|
0.000
|
0.000
|
0.530
|
0.310
|
0.019
|
0.550
|
0.221
|
0.217
|
0.233
|
0.015
|
0.215
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002397
|
1.000
|
3.000
|
Hsc_gene_17247.t1;Hsc_gene_1930.t1;Hsc_gene_1931.t1
|
Hsc_gene_1930.t1;Hsc_gene_1931.t1
|
— |
Q04543.1 Serine/threonine-protein kinase US3 homolog [Cercopithecine herpesvirus 9 (strain DHV)]
|
KAI3413237.1 3-phosphoinositide dependent protein kinase-1 [Globodera pallida]
|
CAI7845216
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.943|GO:0005575_0.839|GO:0110165_0.834|GO:0009987_0.789|GO:0065007_0.702|GO:0005622_0.692|GO:0050789_0.678|GO:0003674_0.663|GO:0050794_0.659|GO:0050896_0.592|GO:0003824_0.550|GO:0016020_0.539|GO:0016740_0.502
|
IPR000719+55-362_62-362_80-359+|IPR011009+75-365+
|
SM00220+62-362+
|
PF00069+80-359+Protein_kinase_domain
|
— |
PTHR44167+80-361+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-433
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
50109.420
|
4.756
|
-13.000
|
28.868
|
11.547
|
50.577
|
49.423
|
13.164
|
15.704
|
42.263
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
244.813
|
9.035
|
2.279
|
124.899
|
51.415
|
3.283
|
3.341
|
12.525
|
72.898
|
938.841
|
567.723
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.219
|
3.653
|
5.894
|
-1.313
|
-3.961
|
— |
1.833
|
-1.764
|
— | — |
-3.967
|
— | — |