Hg_chrom7_TN10mRNA_13548
Organism: Heterodera glycines Gene Locus: chr7:2909670-2913066 Feature type: polypeptideProtein Sequence
Length: 566
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.842 | 1.356 | 0.803 | 0.426 | 0.942 | 0.951 | 0.673 | 0.883 | 1.492 | 1.624 | 1.124 | 2.182 | 2.061 | 0.917 | 0.649 | 0.757 | 0.521 | 1.124 | 0.951 | 0.624 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12778
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.946
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
mitochondria
|
— |
8-34
|
0.981
|
— | — |
1-23
|
0.968
|
1.000
|
1.000
|
1.000
|
0.071
|
0.091
|
0.024
|
0.172
|
0.855
|
0.269
|
0.373
|
0.086
|
0.370
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001921
|
3.000
|
1.000
|
Hsc_gene_19032.t1
|
Hsc_gene_17436.t1;Hsc_gene_19784.t1;Hsc_gene_20845.t1;Hsc_gene_357.t1
|
— |
Q18081.3 Putative UDP-glucuronosyltransferase ugt-48 [Caenorhabditis elegans]
|
KAI1704910.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.815|GO:0003674_0.691|GO:0009987_0.646|GO:0005575_0.625|GO:0110165_0.624|GO:0003824_0.605|GO:0016020_0.585|GO:0005622_0.538|GO:0016740_0.538|GO:0005737_0.531|GO:0043226_0.512|GO:0016757_0.507|GO:0050896_0.502
|
IPR002213+39-495_48-556+|IPR035595+384-427+|IPR050271+17-534+
|
— |
PF00201+48-556+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
G3DSA:3.40.50.2000:FF:000021+305-483+UDP-glucuronosyltransferase
|
PTHR48043+17-534+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-566
|
6lf6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
63921.980
|
8.153
|
8.000
|
22.438
|
12.544
|
40.459
|
59.541
|
12.367
|
10.071
|
45.053
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
766.558
|
66.064
|
2713.499
|
571.940
|
569.388
|
448.480
|
363.748
|
2051.803
|
365.947
|
534.884
|
462.482
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.134
|
2.976
|
-2.140
|
— |
-0.330
|
-0.293
|
2.105
|
-2.361
|
— | — | — | — | — |